Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0307 ATGCGAAGACCCAAATCGAAGGAGTTCAAGAAGCAACAGCGTTTCTCAGAGGAGAACGAGATAACCCTTCTGGAATCATGGATCGAATCCCAGAAACCAGAGCCTGGTTCGAACCCCATGTCGCTCCCTCCGCTCCCAAAAAACGCGCCGATTGGGCTCGTGGACGACTCGTCGTTCTCGCGGTACGCGGGTGTGGTGAGGTTCGACCAGCTCCCGCTTTCGAAGAAAACGAAGGATGGGTTGAAGGGTTCGAAGTTCGTTTCGATGACGGAGATACAGAGAGCTTCTCTGCCTCACGCGCTCTGTGGACATGATATTCTGGGCGCCGCAAAAACGGGTTCAGGAAAAACCCTAGCTTTCATCATCCCTGTGTTGGAAAAGTTGTACAGAGAGAGATGGGGACCTGAAGATGGTGTTGGGAGCATTATAATATCTCCCACAAGAGAACTAGCTGGTCAACTGTTTGATGTGTTGAAGTCTGTTGGCAAGCACCATAATTTCAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAGGAACGTGTCAATGAGCTCAACATATTGATCTGCACGCCCGGTCGCCTTCTGCAACACATGGATGAAACTCCCAATTTTGAATGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGCATTCTTGACAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCGAAGCGTAGACAAACTTTGCTTTTCTCTGCAACCCAAACAAAGTCAATTCAAGATCTTGCTAGGCTAAGCTTAAAGGACCCAGAGTATCTGAGCGTGCATGAAGAGTCTGCAACTGCCACTCCTACTCTGTTGAAGCAAATTGTGATGGTTGTTCCACTTGAACAAAAGTTAGATATGCTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAATACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTCAAGAAGCTGCACCCTGGCATTCCATTGAAGTGTCTTCATGGGAGAATGAAACAGGAAAGAAGAATGGCAATCTATTCTGAGTTTTGTGAGAAGCGCTCTGTCCTCTTTTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAACAAGGCAGTTGATTGGGTTGTTCAGGTGGATTGTCCAGAAAATGTAGCGTCATACATTCACAGAGTTGGCCGTACTGCCCGTTATAAATCTGGTGGAAAGTCGGTTTTATTTCTATTGCCCTCAGAAATTCAAATGCTTGAAAGGTTAAAAGCAGCAAAAGTTCCAGTGCACTTTAATAAGCCAAGGAAAGAACTACTGCAACGAGTTTCCAGTTTGTTGGCATCTTTACTGGTCAAATACCCAGATCTGCAGCATCGGGCTCAAAGGGCTTTCGTCACATATTTACGATCCATACATCTACAAAAGGATAAAGATATATTTGATGTTATGAAACTACCGATTGTTGAATATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATTCGTTTCCTAAACCAGAAAATTAAGTCAAAAGAAGTTTTGACAAAACCAATTTTAGCTGAACCAGAAAGTCCCAAGAAGGAAGACACATTGCAGATCTCAAAAAAGAAGCTAGACTCAAGTGATGATGATGAAGAAACCGAAAATGATATTTTTTTGGCAGCTGGTACCTCAAATGAAGGTGAAAGGAAGACAACTGAACTTGAAGAAATCATACCTGCAACTCGTGTATTGAAGAAAAAGAAGCTCAAGATCAATGTACATAGACCACTGGGGTCTAGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCACTAGCCAGGATTGCTGACACGCAAAGTGGCAAGGAAGCATTGCTGCTTGACCCAGAACAAAAGGCTGAATACTATAGAAAGATGCGTGAGGATTTGAAGAAGGCTGACAAGGAAGACAAGCTTTTAGAGCGCCAGCGTCGCAGAGAAAAAAGAATTAAACAGAAGATGAAGTGGAAGGAAGGGAATGTGGATGAAGATGATGACCAAGATGATGTTTCCGGGTCGGAACCAGATGAAGCTGTGGACAGAAGGCATAAAAGGAGTAAAGTATATTTTGATAGTGACAGTGATGAGGGTGAAAGAAATGAAGTCACAGGAAAAGTAGGTATTGGTGCTGGCTCAGTTACTTTGGAGGAGCAAGAGGCACTGGCTTTGAGATTGTTAAACTCTATGCACTCATAG 2241 0.436 MRRPKSKEFKKQQRFSEENEITLLESWIESQKPEPGSNPMSLPPLPKNAPIGLVDDSSFSRYAGVVRFDQLPLSKKTKDGLKGSKFVSMTEIQRASLPHALCGHDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFECSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESATATPTLLKQIVMVVPLEQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKAAKVPVHFNKPRKELLQRVSSLLASLLVKYPDLQHRAQRAFVTYLRSIHLQKDKDIFDVMKLPIVEYSASLGLPMTPKIRFLNQKIKSKEVLTKPILAEPESPKKEDTLQISKKKLDSSDDDEETENDIFLAAGTSNEGERKTTELEEIIPATRVLKKKKLKINVHRPLGSRVVFDDEGNTLPPLARIADTQSGKEALLLDPEQKAEYYRKMREDLKKADKEDKLLERQRRREKRIKQKMKWKEGNVDEDDDQDDVSGSEPDEAVDRRHKRSKVYFDSDSDEGERNEVTGKVGIGAGSVTLEEQEALALRLLNSMHS* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0307 746 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Dod08g0307 746 SMART helicmild6 325 408 IPR001650 -
Dod08g0307 746 CDD DEADc_DDX10 77 275 - -
Dod08g0307 746 Gene3D - 55 278 IPR027417 -
Dod08g0307 746 Gene3D - 283 524 IPR027417 -
Dod08g0307 746 SMART DUF4217_3 447 510 IPR025313 -
Dod08g0307 746 MobiDBLite consensus disorder prediction 526 555 - -
Dod08g0307 746 Coils Coil 638 658 - -
Dod08g0307 746 MobiDBLite consensus disorder prediction 689 717 - -
Dod08g0307 746 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Dod08g0307 746 MobiDBLite consensus disorder prediction 528 549 - -
Dod08g0307 746 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
Dod08g0307 746 MobiDBLite consensus disorder prediction 648 720 - -
Dod08g0307 746 CDD SF2_C_DEAD 286 417 - -
Dod08g0307 746 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 532 - -
Dod08g0307 746 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Dod08g0307 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 428 IPR027417 -
Dod08g0307 746 SMART ultradead3 85 289 IPR014001 -
Dod08g0307 746 PANTHER RNA HELICASE 57 532 - -
Dod08g0307 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Dod08g0307 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Dod08g0307 746 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0307 Dod-Chr8 3236247 3242276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0307 65 425 Eukaryotic Initiation Factors Gene Family AT3G19760 28.415 6.28e-37 141