Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0305 ATGTTTTTATTGGGCCATCATCCTAACCCTCGCTTCAAATCCAACCACTTCTGCCTCCCCTGCCAACTGCACATCTTCACCCCTATCCACTCCTTCCCCACAGCCCACGAAATCATCCTCAGCTCCAACATCCACCTCGTCTCCGAAAACGACCCGTCGTTTACTCTTTCTGAGTCCCAAGCTGTCAAAGAAACCAAAGCCGAGAAAAGGTACAGGAGCGTCGATGAGATCTTCAGGCTCATTGACGAGAGCCTCTTCAGCAAGGACCGTTCTGACCACGCGCTTGAGCCGCCGCGTGATGAAGGCTTGGGGTGGCTTGTGAATAGAGAGTATTCCAACGAGTTGCCGCCGTTTTGGGAAGAGAGGGAAAAAGGTGAATTCGTGAACATCTTGACGAATTACAAAATCACGAACAGGCCTGAGCCTTTAAGAGGTGGGATTCTAGCGGATGCTATGGGGTTGGGTATGACTCTGACATTGCTTTCTTTGATTGTGATTGATAGAGGTTGTGGTTGTGGGAGTGGGGATGTTGAAAAGAAGAGTGGAAAGAAAGGTTCTGTTTTGCGGAAGAGGAGAAAGATTATGAGTGATTGTAATGGCTCTGATGATTCATTTTTTTATGCTGGGTTGGAGACCAATGCGACATTGTTGGAGGAGCACATTGTTCCAGGATCTTTGAGGACTTACATGTATTATGGTGATAAGAGGACAAGGGATGCTGATGAACTCAAGAAGAATGATTTGGTGTTGACTACTTATACCACATTGTCGACTGAGGAGAATCTGGTTGAGGCACCGGTGAAGAAGCTCCAGTGGAGGAGGATCTGA 828 0.4758 MFLLGHHPNPRFKSNHFCLPCQLHIFTPIHSFPTAHEIILSSNIHLVSENDPSFTLSESQAVKETKAEKRYRSVDEIFRLIDESLFSKDRSDHALEPPRDEGLGWLVNREYSNELPPFWEEREKGEFVNILTNYKITNRPEPLRGGILADAMGLGMTLTLLSLIVIDRGCGCGSGDVEKKSGKKGSVLRKRRKIMSDCNGSDDSFFYAGLETNATLLEEHIVPGSLRTYMYYGDKRTRDADELKKNDLVLTTYTTLSTEENLVEAPVKKLQWRRI* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0305 275 Pfam SNF2-related domain 101 274 IPR000330 GO:0005524|GO:0140658
Dod08g0305 275 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 217 275 - -
Dod08g0305 275 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 49 173 - -
Dod08g0305 275 Gene3D - 126 275 IPR038718 -
Dod08g0305 275 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 217 275 - -
Dod08g0305 275 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 49 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0305 Dod-Chr8 3212942 3214249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0305 5 275 RAD5 or RAD16-like Gene Family AT5G05130 43.791 2.25e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod08g0305 SNF2_N 2.3e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0305 K15711 - fve:101311093 240.35