Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0296 ATGACCAAGTGGTTTTCTGGAATGACAGAAACAGCACCAAGGTGCAAGGAGGTTTTTTCGTTGTGTGTTTTGGCTGGCATTGGCGATTCTGCAGTTAGGCTATTCATGAAAGCTATGGAAAGAGTTCTTTTTGCTGCATTTACTTTTATTCTAGCACTAGGAGGGTCAATAATAGGAACAGTTGCAGGAGGCATCAAAGGCCAAACTACAGAAGCTGGTTTTCTTGATGGTGCTGGCAAAGGAGCAGTCACAGGAGCAATTGCAGCCATAGAATTGATGAATTTTGGGGCTCTTGATGATCCATTGTTCAAGGTGCTGTTGAGCAGTTTATTAAATGGGAAAGTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCCTATCAGCTGCATATCAACAGAGCAGAAGAAGAAGTATCAGATATTTATGATATCAAGGGGGCCAAAGGGATGCCCCAGAATCATATTCTGAAGCTTCCTTTTCAGCAATTCAACTCAAGCAAAATGTTGAAGTTATGCAACATGTCAGGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAGTTAATCAGGAAACTTCCAAAATGCAGCCACCATTTTCATTTACAGTGCATAGACAAATGGCTAGCTCAACAAGGATCATGCCCAATGTGTAGAGCTCATGTTTCTAATCACACTCATGAATTGTAG 693 0.4156 MTKWFSGMTETAPRCKEVFSLCVLAGIGDSAVRLFMKAMERVLFAAFTFILALGGSIIGTVAGGIKGQTTEAGFLDGAGKGAVTGAIAAIELMNFGALDDPLFKVLLSSLLNGKVFMEWICPAVAQAYQLHINRAEEEVSDIYDIKGAKGMPQNHILKLPFQQFNSSKMLKLCNMSGCSICFQDFEDGELIRKLPKCSHHFHLQCIDKWLAQQGSCPMCRAHVSNHTHEL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0296 230 CDD RING-H2_PA-TM-RING 178 220 - -
Dod08g0296 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Dod08g0296 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 224 IPR044523 -
Dod08g0296 230 SMART ring_2 178 219 IPR001841 -
Dod08g0296 230 Pfam Ring finger domain 178 220 IPR001841 -
Dod08g0296 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 224 - -
Dod08g0296 230 SUPERFAMILY RING/U-box 177 226 - -
Dod08g0296 230 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0296 Dod-Chr8 3148528 3151152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0296 21 223 C3H Transcription Factor Family AT5G66070 36.866 4.33e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0296 - K19041 gmx:100305612 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0296 08 3148528 3151152 Dod08g0296 08 3148528 3151152 ECH