Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod08g0293 | ATGCCCTCAGCTCAAGATCCCTTCTACGTTGTCAAGGAAGAGATTCAAGACTCCATTGATAAGTTGCAATCTACTTTTCACCAATGGGAAAGCACTCCTGATGGTGGAGAGCGAGCAAATCTTTCAAAGGAAGTTGTTGCCAGTTGTGAGAGTATTGAATGGCAGGTAGATGAATTGGACAAAGCAATTGCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAGCCGGAGGAGGTGGACCAGCGGTGCTCGCACCCAGGTGCGCACAATGAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAGTACATCAAACCATGCTAGTGCAAATGGAATGCACAGGGAATTACTGAGGCTTCCAAATTCTCATCAAGCTGATACGTCCAACCAATATGCTGCCCATGATAATGATGATTTCATAGAATCAGAATCCGATAGACAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGCGTTGGACTTACGATACATGAAGAGCTCGTAGCACAGGAAAAGATTGTTGATGAGCTGGGTGCAGAAATGGACAGTACATCAAATCGTCTAGATTTTGTACAAAAAAAAGTGGCAATGGTGATGAAGAAGGCTAGTGCAAAGGGTCAGATCTGTATGATATTGGGTTTGCTGGCCCTGTTCATTTTCCTATTCATCTTGGTATTCTTCACCTAA | 741 | 0.4359 | MPSAQDPFYVVKEEIQDSIDKLQSTFHQWESTPDGGERANLSKEVVASCESIEWQVDELDKAIAVASRDPSWYGIDEVEIESRRRWTSGARTQVRTMKKAVEAGKGSSTSNHASANGMHRELLRLPNSHQADTSNQYAAHDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELVAQEKIVDELGAEMDSTSNRLDFVQKKVAMVMKKASAKGQICMILGLLALFIFLFILVFFT* | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod08g0293 | 246 | PANTHER | SYNTAXIN | 1 | 245 | IPR045242 | - | |
| Dod08g0293 | 246 | Pfam | Syntaxin 6, N-terminal | 6 | 98 | IPR015260 | GO:0016020|GO:0048193 | |
| Dod08g0293 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 154 | 216 | IPR000727 | - | |
| Dod08g0293 | 246 | Coils | Coil | 192 | 212 | - | - | |
| Dod08g0293 | 246 | Gene3D | - | 161 | 225 | - | - | |
| Dod08g0293 | 246 | SMART | tSNARE_6 | 149 | 216 | IPR000727 | - | |
| Dod08g0293 | 246 | PANTHER | SYNTAXIN PROTEIN | 1 | 245 | - | - | |
| Dod08g0293 | 246 | Pfam | SNARE domain | 191 | 242 | IPR000727 | - | |
| Dod08g0293 | 246 | SUPERFAMILY | SNARE fusion complex | 152 | 216 | - | - | |
| Dod08g0293 | 246 | Gene3D | - | 2 | 104 | - | - | |
| Dod08g0293 | 246 | CDD | SNARE_Qc | 157 | 214 | - | - | |
| Dod08g0293 | 246 | SUPERFAMILY | t-snare proteins | 5 | 101 | IPR010989 | GO:0016020|GO:0016192 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod08g0293 | 55 | 246 | SNARE and Associated Proteins | AT1G28490 | 70.312 | 6.84e-95 | 275 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod08g0293 | K08500 | - | gmx:100793612 | 374.785 |