Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0280 ATGATCTCTGGAAGGTGTGCTGCTTGCAAGAATCAGAGAAGGAAATGCCCTTCAGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTGTGTTCACAAAATATATGGTGGTAGCAATGTTGGAAAAATGCTTCAGGAAATACCACTCTATTTACGAGAAGATGCTGCAAATACATTGTACTTAGAAGCACAATTTAGGATTCAAGACCCTATTTACGGATGTGTTGGCATTATATCTAAATTGTGTCAACAAATCCAAAATGCAGAAATTGAGCTAGCCAAAATCCAGACTCAGATTGTCTTCCACAAGCTCCAAATCCCACATGTTGAAGCCAATGAGTCAAACTTAAATAACGTGTTGTCCACTGTTGAAGGCCAACCAAACTTTGATATTTTGCCATCACAAAGCAGCACCATGGGGCAATTTCAGTGGGGTCACTCCAGTATGGTTCCGTGGTTCAATTAA 483 0.3996 MISGRCAACKNQRRKCPSDCIFSPYFPANDPQRFACVHKIYGGSNVGKMLQEIPLYLREDAANTLYLEAQFRIQDPIYGCVGIISKLCQQIQNAEIELAKIQTQIVFHKLQIPHVEANESNLNNVLSTVEGQPNFDILPSQSSTMGQFQWGHSSMVPWFN* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0280 160 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Dod08g0280 160 Coils Coil 84 111 - -
Dod08g0280 160 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Dod08g0280 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 116 - -
Dod08g0280 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0280 Dod-Chr8 2991115 2991734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0280 1 119 AS2 family AT3G26660 52.941 5.26e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod08g0280 LOB 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0280 - - lang:109328513 226.868