Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0258 ATGATTAACATGGAAGCCACATGGAATGATGGCATTGTTGACATGGGAAATTCTACTGTTGCTGAACATTCTTCTTCTCCAGTCATGTCATTTAGTGACAAACGACAAGTCATAGATGAGATGGATTTCTTCGCTGAGAACAAGAAAAATAATAACAGTAGCTGCCAAGATGATAATAATAATAATGATCATGATGAAATGGTGCACACTAGTATGGAGCTTCATGTAGATACTAGCTTAGATCTTCGTATGAAGAATACTACTACCGGTAGCAGCAATGGATCAACAATGGAAGATGTGGCATCGGAAACTATGGATGATAAGAAAAATGAGTTTGTAGCTTTGCTTGCTGAATTGCACCAGATGAGTGCTGAGAACCAACGTTTGAGAGAGCTGGTTGATGAGGTGAACAATAACTACAATGCCCTACACATGCAACTTATCAAGCTGATGCAAAGGGAGCAAAACCAAGGGATTAACAGAGAAATAGAGGATAAGGGTAAGAAAGAAGAAGATATGGTTCCAAGGCCCATTTTAGACATGGGTGTAGCTGGTTTTGCTGAAAAAGATGAGTATCCCCAGCAATCTTCAGAGGTCAAAATGAGAGAAAGCAAAAGCATGGCTCACTTGGTGGAGTGCAATAAGGCACAGCAGAATATTTGTACAAGCAAAGATATTATTCTGCACAATTCTGGGAGGGACAGTTCAAATGCCAGAATGGACAGGAGCACATCTGATCAAGGATTTCCATCAGGGTGGCTCTCTAACAAAGTTACTAGGTTGAATTCTTTGAGGGATGTTGATCAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCGGTTCGAGCAAGATCAGAATCTTCAATGATTGTAGATGGATGCCAATGGCGAAAATATGGGCAGAAGATGGCAAAAGGGAATCCGTCTCCTAGAGCTTATTATCGTTGCACTATGAGTACTGGTTGTCCAGTACGAAAACAAGTACAAAGGTGTGCTGAAGATCAAAGTGTGTTGATCACTACATATGAAGGGCAGCACAACCATCCACTCCCTCCAACTGCCAAGGCAATGGCATCCACCACATCTGCAGCAGCCTCAATGCTTCTTTCAGGATCAATGCCTAGCTCAGATGGCCTAATCAATCCAAGCATATTGGAAAGTGCTCCACTTCCATGCTCACAGAACATGGCAACACTCTCAGCCTCAGCACCATTTCCAACCATCACATTGGACCTCACTCAGAGTGCTAATATCAACAATTCCTCACAGCTACAAAGGGAGCCTCAGAGCCAACTTAGCCTCCTAACACCCCTTTTGGCACAGAAGTTTATGTCAGCTCCCAACATTTTTGGTCATGCCTTTGGTGAACAAACTAAGCTTCCTGGCTTACAAGGGTCTCAGGGAATAGACATAACCCCATCATTTGCTGACACAATAAATGCAGCTACTGCTGCTATCACTGCAGACCCAAATTTCACTTCAGCTCTTGTGGCAGCCATAACATCTATCATCGGGAGTTCACACCAAAACAACAATGGTAGCAATAATTCAAGTGGAGATCAGCATTGCAATGATGCATGA 1590 0.4264 MINMEATWNDGIVDMGNSTVAEHSSSPVMSFSDKRQVIDEMDFFAENKKNNNSSCQDDNNNNDHDEMVHTSMELHVDTSLDLRMKNTTTGSSNGSTMEDVASETMDDKKNEFVALLAELHQMSAENQRLRELVDEVNNNYNALHMQLIKLMQREQNQGINREIEDKGKKEEDMVPRPILDMGVAGFAEKDEYPQQSSEVKMRESKSMAHLVECNKAQQNICTSKDIILHNSGRDSSNARMDRSTSDQGFPSGWLSNKVTRLNSLRDVDQASETMSMIKKARVSVRARSESSMIVDGCQWRKYGQKMAKGNPSPRAYYRCTMSTGCPVRKQVQRCAEDQSVLITTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSSDGLINPSILESAPLPCSQNMATLSASAPFPTITLDLTQSANINNSSQLQREPQSQLSLLTPLLAQKFMSAPNIFGHAFGEQTKLPGLQGSQGIDITPSFADTINAATAAITADPNFTSALVAAITSIIGSSHQNNNGSNNSSGDQHCNDA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0258 529 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 18 517 - -
Dod08g0258 529 SUPERFAMILY WRKY DNA-binding domain 287 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod08g0258 529 Coils Coil 105 153 - -
Dod08g0258 529 Gene3D WRKY domain 278 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod08g0258 529 MobiDBLite consensus disorder prediction 232 251 - -
Dod08g0258 529 Pfam WRKY DNA -binding domain 295 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod08g0258 529 MobiDBLite consensus disorder prediction 510 529 - -
Dod08g0258 529 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 517 IPR044810 GO:0003700
Dod08g0258 529 SMART WRKY_cls 293 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod08g0258 529 ProSiteProfiles WRKY domain profile. 288 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0258 Dod-Chr8 2798319 2801647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0258 35 518 WRKY Transcription Factor Family AT1G62300 46.019 6.19e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dod08g0258 WRKY 6.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0258 - - adu:107496306 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0258 08 2798319 2801647 Dod08g0258 08 2798319 2801647 ECH
Dod08g0258 08 2798319 2801647 Dod03g0870 03 10739177 10742020 ECH
Dod05g0794 05 12625159 12629059 Dod08g0258 08 2798319 2801647 PCT