Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0249 ATGAGAAGGGGCAGAGGAGCTGCGGCCCTAAAACCGGCGGCGGTCGTCACGGCTGAGATGAACGGATCCGCGGCGGGACCCGTTTTAAAGGAGCCCCGATACCGCGGCGTGAGGAAGAGACCATGGGGAAGGTTCGCCGCAGAAATCAGAGACCCTTTGAAGAAGGCTAGGGTTTGGCTAGGAACCTTTGATTCCGCCGAGGAGGCGGCGCGTGCATACGACGCGGCGGCGAGAACCCTCCGTGGACCAAAAGCGAAGACCAATTTCCCTCTCAATTCCCCCTTCTGCTTCAACCACCACGGCGGCGCGGTCACCGGCGATCAGTTTTTCTACTCCGCCGCCGTCAACGGAGGTTTTCAGGAGAGTCCGGTGAACCCTCAGAGGCCGGCCACTAGCGGCATGAGCAGCACAGTCGAGTCATTCAGCGGTCCACGGCCGCCGGCGCCGCCGTTGACAGCGGCGCCGGCGAGGAGGTATCCCCGGACTCCGCCGGTTGTGCCGGAAGATTGCCATAGTGATTGTGATTCTTCATCGTCGGTGGTGGACGACGGTGACAACATCGTTTCGTCGTCGTTTCGGGCGCCGTTGCCGTTTGACCTCAACGCGCCGCCGTTGGAGGGTGGATGTGACGATGATGAGCTTCGATGCACTGCTTTGTGCCTCTGA 666 0.6156 MRRGRGAAALKPAAVVTAEMNGSAAGPVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLNSPFCFNHHGGAVTGDQFFYSAAVNGGFQESPVNPQRPATSGMSSTVESFSGPRPPAPPLTAAPARRYPRTPPVVPEDCHSDCDSSSSVVDDGDNIVSSSFRAPLPFDLNAPPLEGGCDDDELRCTALCL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0249 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 204 - -
Dod08g0249 221 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Dod08g0249 221 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Dod08g0249 221 MobiDBLite consensus disorder prediction 122 186 - -
Dod08g0249 221 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Dod08g0249 221 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Dod08g0249 221 MobiDBLite consensus disorder prediction 172 186 - -
Dod08g0249 221 MobiDBLite consensus disorder prediction 122 142 - -
Dod08g0249 221 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Dod08g0249 221 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Dod08g0249 221 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Dod08g0249 221 MobiDBLite consensus disorder prediction 143 162 - -
Dod08g0249 221 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Dod08g0249 221 PANTHER ETHYLENE RESPONSE FACTOR 23 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0249 Dod-Chr8 2739046 2741207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0249 1 221 AP2-EREBP Transcription Factor Family AT1G50640 58.898 1.50e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod08g0249 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0249 K09286 - gmx:100803943 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0249 08 2739046 2741207 Dod08g0249 08 2739046 2741207 ECH
Dod05g0779 05 12280652 12282044 Dod08g0249 08 2739046 2741207 PCT