Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod08g0237 | ATGATGCAAACGACGTCGCACGCGGAGGTGGAGGAGCTCCCCGAAGCCAAGCGCCCAGTCCAGAACGGCGATGACGGCCGCTGCGCCAAGAAGCCCAGGGTCGAGGACAACCGCGACGATTCCTCCGTCGCCGGAGGGGAATTGAAGAGAGTGGCTGAGATTGTGCTTGTTCTGTCGACGATGGCGGCGATGCGTGCTGGTCGGAAGCCCACCGACGTGGAGGTCGAGCTCATGAGCGAGGCTCGGACCAAGCTCGCCGACCTCTGCGAAGGCCTAGCGCCGAAGGACATCGTTGCGAGGGAAGCGATTGGGACGGTGATTGAGGATTTAGGGTTGAACGGCAAGGTTAAGGACCAGAGGTTAGGGTTTCGAACCCCTAAGATGTCAATTGCAGAGAGATTCTCGCACGCTAAGTGGAAGATGGAGGAATCTAAGAAGTTTTCTGCTGCACCCTCTACAACTTATACATCTCAACCCTTGCAAACAAGCATTGGTGTAACAGTTGACAACCGTGTGCCACCACATGGTGTTCGTATGTATGCGTCCGATAAACCAAGTCACGCAGCAATCTCTTCTTCAGGTACCATTGTGTCTATTCCTGCCCATGTTTCTGCAGGATCTTCTGCTGCGTTGCAAACACAATATCAATCTACTGGCAATGAAGTAAGACCGCCCATGGTTTCTGGTGTAATGCCTAGCCCACACTTGGGGAGGAATTCATCTTCGTTGGCATTACCCAAAGTTGAACACCCACCAGTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATGTGCTTCATGTACCAGCAAATTCTTCAGCAAACCAACCGTTGGTGAATGCTCCAACATGGTCAATTCAGACTCAATCTGCATCCTTAGCTAGAAGTGCATCAGAAAACAAAGTGCCTGCTCATAACACTGTCAAGGTTGAAGGAACAGGTAATGTTGCTTTGTCAAGGGCAGGGCCACAGATAACAACGGACCAGAGCTTTAGACCATTTATTACTCAAACAGTACCTGGAAACTTGTCTAGTGTGCACCAGCCATTGCAGGGCATGAGCATTGTTCAGCCTCCTTCAATTCCTAGTCATGCTGAAATTGCAAAGACTGTCCAGAAATTGCTACAACCAAAGCTTCCTGAGCATCCCACATGGACCCCTCCATCAAGGGATTACATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCACTGTCAATGAGGTTGATACTGTACTCATCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCCATCCTAAGAGGAATTCATAATAGAGTGGATTGGCACTGCATGAGGTGTTTGAATTTAAGTGGTGGAAAGCCTTTGCCTCCAAAGTATGGTCGAGTCATGAGATCATCAAACACACCACCAAAATTGCCCTCTAACACAGTTGGAGTTCAACAATCTTCCGAAAAGAAAGCAGGGAGCTTAGATCCAAAGGTCAGCAAGCAAAAGTTAACGACAAATGGGAGCACTGTTCCAGCTGTTGCTACTAGCAATGTCAATGTTGAGCCACCATCTGACTCAAAGATCCCAGATACAAAAGTTATACAAGGTACCGACATTTCATCAAGCACAAAACATAGTGATGAGAAGCATGATCCAAACATCTCTATGAAATCCCTGAGTAAATGTGACAATTTGCAATCATCACAAGATTTTCCAGTTGAGCAGACTGTGTCACAAGATAGTACTGGAGTATCATCAGATAAATGCGTTGACGGTAATTTAATGAATAATAAACAAAAGGAAACTCATGGAGGAGAAAGCTTAACTTACGATATCAAGCGTGATGGCCAAGATGTTGCACTAGCAAACTTTGATGGGAGTTCTGGAACTAATACTGAAGGTAGACAGCACTCTGCAGTATCTTCAGATAGCTCACAAGCTGTAGAATGGATTGGTGATGTTATACAAGTTGTGGATGAGAAAAAGTTTTACCTATCTTGCTGTGTTGATGGAGTAATATATAGGCTGCCGTGTCATGCTCTTTTCCTATCTGGCCATGGCAAATTAACGCCTACTAAACTTCAGGCAAGCAAATCAGCATGCTTTCCATTTGACATTTTCCCATTTTATTTCCAGTCTATGTGGGAAGATTGTAAAACTGGGTTAAAGTGGGTCAAGGTGACAAGGTGCTACTTTCCTGGTGATTTGCCTGGGAATATTGCTCATCCTTGTATATCTGAAGTTAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCAAGGCCCATGTGAAGTCCTCCCATCTGACAAATTTAAGCAAGAAACTGACTAG | 2337 | 0.4561 | MMQTTSHAEVEELPEAKRPVQNGDDGRCAKKPRVEDNRDDSSVAGGELKRVAEIVLVLSTMAAMRAGRKPTDVEVELMSEARTKLADLCEGLAPKDIVAREAIGTVIEDLGLNGKVKDQRLGFRTPKMSIAERFSHAKWKMEESKKFSAAPSTTYTSQPLQTSIGVTVDNRVPPHGVRMYASDKPSHAAISSSGTIVSIPAHVSAGSSAALQTQYQSTGNEVRPPMVSGVMPSPHLGRNSSSLALPKVEHPPVKVDGGSNGSSYVLHVPANSSANQPLVNAPTWSIQTQSASLARSASENKVPAHNTVKVEGTGNVALSRAGPQITTDQSFRPFITQTVPGNLSSVHQPLQGMSIVQPPSIPSHAEIAKTVQKLLQPKLPEHPTWTPPSRDYMNKALTCQMCELTVNEVDTVLICDACEKGFHLKCLQPSILRGIHNRVDWHCMRCLNLSGGKPLPPKYGRVMRSSNTPPKLPSNTVGVQQSSEKKAGSLDPKVSKQKLTTNGSTVPAVATSNVNVEPPSDSKIPDTKVIQGTDISSSTKHSDEKHDPNISMKSLSKCDNLQSSQDFPVEQTVSQDSTGVSSDKCVDGNLMNNKQKETHGGESLTYDIKRDGQDVALANFDGSSGTNTEGRQHSAVSSDSSQAVEWIGDVIQVVDEKKFYLSCCVDGVIYRLPCHALFLSGHGKLTPTKLQASKSACFPFDIFPFYFQSMWEDCKTGLKWVKVTRCYFPGDLPGNIAHPCISEVNEVYESNSDRTEMASSIQGPCEVLPSDKFKQETD* | 779 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod08g0237 | 778 | Gene3D | - | 637 | 778 | IPR043151 | - | |
| Dod08g0237 | 778 | MobiDBLite | consensus disorder prediction | 10 | 42 | - | - | |
| Dod08g0237 | 778 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 557 | 778 | - | - | |
| Dod08g0237 | 778 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 8 | 557 | - | - | |
| Dod08g0237 | 778 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Dod08g0237 | 778 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 557 | 778 | - | - | |
| Dod08g0237 | 778 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 8 | 557 | - | - | |
| Dod08g0237 | 778 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 388 | 460 | IPR013083 | - | |
| Dod08g0237 | 778 | ProSiteProfiles | Zinc finger PHD-type profile. | 396 | 449 | IPR019787 | - | |
| Dod08g0237 | 778 | MobiDBLite | consensus disorder prediction | 538 | 552 | - | - | |
| Dod08g0237 | 778 | MobiDBLite | consensus disorder prediction | 553 | 599 | - | - | |
| Dod08g0237 | 778 | SMART | PHD_3 | 398 | 447 | IPR001965 | - | |
| Dod08g0237 | 778 | MobiDBLite | consensus disorder prediction | 455 | 603 | - | - | |
| Dod08g0237 | 778 | SUPERFAMILY | FYVE/PHD zinc finger | 389 | 455 | IPR011011 | - | |
| Dod08g0237 | 778 | Pfam | PHD-finger | 399 | 447 | IPR019787 | - | |
| Dod08g0237 | 778 | MobiDBLite | consensus disorder prediction | 467 | 537 | - | - | |
| Dod08g0237 | 778 | ProSitePatterns | Zinc finger PHD-type signature. | 399 | 446 | IPR019786 | - | |
| Dod08g0237 | 778 | CDD | PHD_SF | 398 | 446 | - | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Dod08g0237 | PHD | 2.9e-07 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod08g0237 | - | - | gmx:100807139 | 1144.41 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod08g0237 | 08 | 2647922 | 2652614 | Dod08g0237 | 08 | 2647922 | 2652614 | ECH |