Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0216 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCATGGGACACTGATGAGGAACGCCTCAAGGAATATTTTGGGAAATTTGGGGAGGTTATTGAGGCTGTGATCATGAGGGATCGCGCCACGGGGCGTGCTCGCGGCTTTGGTTTTGTTGTCTTTTCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACTGTTGAAGCAAAGAAGGCTGTTCCTAGGGATGATTCGCAAACTATAAATAGGCAGCATGGTAGTATGCATGGATCTCCTGGCCCCGGACGCACAAAGAAGATCTTTGTTGGAGGTTTACCATCAACGATCACAGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGATTCGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGATCGTGTTCTCTATAAAACATTTCATGAACTCAATGGGAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCACCTGGACCTAGCAGGAGCCCATTGATTGGATATAACTACGGTTTGAATAGGGCAAGTAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATTAATCCTTTAGGAGGCTATGGAGTCCGGATGGATGGTAGGTTTAGTCCACTTACTAGTGGTAGAAGTGCATTTTCCCCATTTGGCTCCAGTGATTACGGAATGGGAGTGAATTTAGATTCCGGAATGAATCCAAGCTATGGAGGGACTTCAAATTATGGGGGCGGTCTAGGATATGGTCGGATATTTAGTCCTTTCTATAGCGGCAACTCAAGCAGATATACCACTCCTATTGGCTTTAGTGGGGCCAATGCGAGAAGTGATTCTCTTACGAACTCGACTTCTCGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCTGCCAATAATCCAGTCAGCCCTGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCGATTGGAAATAGTGGCACAAACTGGGGTCCATCTGTTCCAGCCCAGGGTGGAGGGGCTGCTTCCGGCTATACTACTTGGAGCAATGTTTATGAAGGTGGAGATAGCAGCATTGGATTAGGAGGGGGAGGGTATGGAAGGAACAGCAGCCCAGGTGTGACACAATCCTCTACATTTACTGTACCAGCCGGGGGTTATGAAGGATCCCTATGGGGACATATACCGTAG 1260 0.4635 MESDLGKLFIGGISWDTDEERLKEYFGKFGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIMDKHIIDGRTVEAKKAVPRDDSQTINRQHGSMHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASSYLNSYAQGFNINPLGGYGVRMDGRFSPLTSGRSAFSPFGSSDYGMGVNLDSGMNPSYGGTSNYGGGLGYGRIFSPFYSGNSSRYTTPIGFSGANARSDSLTNSTSRNVWGNGGLNNAANNPVSPGAYLGSGSGAFGVSIGNSGTNWGPSVPAQGGGAASGYTTWSNVYEGGDSSIGLGGGGYGRNSSPGVTQSSTFTVPAGGYEGSLWGHIP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0216 419 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Dod08g0216 419 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 414 - -
Dod08g0216 419 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Dod08g0216 419 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Dod08g0216 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dod08g0216 419 Gene3D - 105 185 IPR012677 -
Dod08g0216 419 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 414 - -
Dod08g0216 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Dod08g0216 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Dod08g0216 419 Gene3D - 6 87 IPR012677 -
Dod08g0216 419 SMART rrm1_1 107 179 IPR000504 GO:0003723
Dod08g0216 419 SMART rrm1_1 7 78 IPR000504 GO:0003723
Dod08g0216 419 MobiDBLite consensus disorder prediction 80 105 - -
Dod08g0216 419 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Dod08g0216 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0216 Dod-Chr8 2506414 2509813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0216 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.612 5.49e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0216 K14411 - gmx:100788515 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0216 08 2506414 2509813 Dod08g0216 08 2506414 2509813 ECH
Dod05g0713 05 10938323 10942005 Dod08g0216 08 2506414 2509813 PCT