Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0171 ATGAAGAAGGCACTTCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTTCAGGAGTGCGTCTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAACGTGAGAAGCGGAAGACGATCAACGGCGACGATCTGCTCTGGGCTATGACAACGCTAGGGTTCGAGGAGTACGTTGAGCCGCTCAAAATCTACCTCCAGAGGTTCAGGGAGATGGAAGGTGAGAAGAGCGTGGCGGCACGTGATAAAGACGCCGGGGTCGTTGGCGCTGGATACGATTACGGAGGTGGCGGCGGTGGTGGTATGGGGATGGTGATGCATCAGGGACACGTGTACGGTTCTGGTGGATTCCATCAAGTGGCTGTGAGTGGTGGTAGTGGAAGTGGTGGTGGTCCTGTTATGGGTAAGGGTGGGCCCAGTTATCCTGGTGCTGGATCTAATGCGGGTAGGCCCAGATAG 474 0.5738 MKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREMEGEKSVAARDKDAGVVGAGYDYGGGGGGGMGMVMHQGHVYGSGGFHQVAVSGGSGSGGGPVMGKGGPSYPGAGSNAGRPR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0171 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 118 - -
Dod08g0171 157 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod08g0171 157 SUPERFAMILY Histone-fold 1 87 IPR009072 GO:0046982
Dod08g0171 157 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Dod08g0171 157 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Dod08g0171 157 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Dod08g0171 157 Gene3D Histone, subunit A 1 93 IPR009072 GO:0046982
Dod08g0171 157 MobiDBLite consensus disorder prediction 128 157 - -
Dod08g0171 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Dod08g0171 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0171 Dod-Chr8 1819663 1820136 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0171 1 85 CCAAT-HAP3 Transcription Factor Family AT4G14540 90.588 4.08e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod08g0171 CBFD_NFYB_HMF 1.2e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0171 K08065 - gmx:100813169 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0171 08 1819663 1820136 Dod08g0171 08 1819663 1820136 ECH