LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g0168	ATGGAGCGTGATGGTTCTTCCTCTCACTATGGCCAGCCTGATAACTCGAGCTTCAACTCAAATAGCGAGAATCCTACACGTGAGAACCAAGATAGCCCCAAAACCCTGCCCATTTCGAGTATTGTGAGGCTCATGAAACAGATCCTTCCAAAAAATACGAGGATCTTTGATGAAGCGAAAGAAACCATCCAAAATTATGTGGTAGAGTTCATTGGATTCGTGACGAGCGAGGCCAGCGAGCAGTGTGAGAGGGAACAACGAAGGACTATCACTTCTGATGACCTCATATGGGCCATGTCAAGCCTTGGCTTCCACAAATATGCTGAGCTTCCTCATCATTTACCATGA	348	0.4626	MERDGSSSHYGQPDNSSFNSNSENPTRENQDSPKTLPISSIVRLMKQILPKNTRIFDEAKETIQNYVVEFIGFVTSEASEQCEREQRRTITSDDLIWAMSSLGFHKYAELPHHLP*	116

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g0168	115	Gene3D	Histone, subunit A	22	112	IPR009072	GO:0046982
	Dod08g0168	115	SUPERFAMILY	Histone-fold	35	109	IPR009072	GO:0046982
	Dod08g0168	115	PRINTS	CCAAT-binding transcription factor subunit A signature	101	115	-	-
	Dod08g0168	115	PRINTS	CCAAT-binding transcription factor subunit A signature	63	81	-	-
	Dod08g0168	115	PRINTS	CCAAT-binding transcription factor subunit A signature	82	100	-	-
	Dod08g0168	115	MobiDBLite	consensus disorder prediction	1	37	-	-
	Dod08g0168	115	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	35	99	IPR003958	-
	Dod08g0168	115	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	12	109	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Dod08g0168	115	MobiDBLite	consensus disorder prediction	8	37	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g0168	Dod-Chr8	1799156	1800531	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g0168	10	109	CCAAT-HAP3 Transcription Factor Family	AT5G47670	48.000	1.24e-29	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Dod08g0168		CBFD_NFYB_HMF	3.1e-20	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g0168	K08065		-	ini:109148615	105.916