Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0142 ATGAATTCTAGGTGCTTCCTTCCACTTCCACCCGAGTCCTTGTTCAACTCAAGCAGCATGGCTTCATTTTCTTCAAATTCTGCAGCAGGAGAAGAGAGAGTGCCTAGTAATAGGAACAGGCCTAGACCTTCTTTCATGGTTCGGATGGCCATGAGGGTATCTAGAGCAAGATGGTTTACCTTCTTGAGAAGAGTGTTTCATTACCAAAATGGATCAAGGTCCAACCTTGGCTCTAATCCTTTCAATACTAGCACATGGATGATGCTGGAGTTTATTGCTTTGATGGTCCAGATAACCGTTATAACCTTCACTTTGGCTATTTCAAAGAGGGAGAGACCTGTTTGGCCTATGAGGATTTGGACAGCTGGTTATGATATTGGCTGTATTCTTAATCTGCTGCTGCTTTATGGGCGCTACCGGCAAATTCATCTGGCTCAAGGAGATGCTCTCAGCTTTTCTGATATGGAGCAGCAGATAAACAATGAAGAAACCAGTGTGTACAGGATCTCCCATTTGATGAACAAGTGCCGGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGATTTTTGACTCACGTTTTGGATCTTTTCACCAAGCTCCAAAGCTCCATGTGCTGTGCATCACCCTCCTTGCATGGAATGCTATCTGCTACTCTTTCCCTTTCCTGCTGTTTCTGCTGTTATGCTGCTGTGTGCCTCTGATTAGCCGCCTCCTCGGTTACAACATGAACATGGGGTCTTCTGATAAAGGAGCATCTGATGATCAAATTTCACAACTTCCAAATTGGAGATATAAAGAAGCTCATACCAAGTTAGAGCTTGGCAATGACTCTGAAGGCAGTAGTGACAAATTGATCAATGAGGATCCAGAATGCTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGACAATTGCCATGTTCCCATGTGTTCCATCTTAAATGTGTGGATCAATGGCTAAAAATCATATCCTGCTGCCCTCTTTGCAAACAAGGATTAGATAGGTAG 1035 0.4319 MNSRCFLPLPPESLFNSSSMASFSSNSAAGEERVPSNRNRPRPSFMVRMAMRVSRARWFTFLRRVFHYQNGSRSNLGSNPFNTSTWMMLEFIALMVQITVITFTLAISKRERPVWPMRIWTAGYDIGCILNLLLLYGRYRQIHLAQGDALSFSDMEQQINNEETSVYRISHLMNKCRTSLELFFAIWFVMGNVWIFDSRFGSFHQAPKLHVLCITLLAWNAICYSFPFLLFLLLCCCVPLISRLLGYNMNMGSSDKGASDDQISQLPNWRYKEAHTKLELGNDSEGSSDKLINEDPECCICLAKYKDKEEVRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLDR* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0142 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 343 IPR013083 -
Dod08g0142 344 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 343 - -
Dod08g0142 344 Pfam Ring finger domain 297 339 IPR001841 -
Dod08g0142 344 SMART ring_2 298 338 IPR001841 -
Dod08g0142 344 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Dod08g0142 344 CDD RING-H2_RNF111_like 296 339 - -
Dod08g0142 344 SUPERFAMILY RING/U-box 289 342 - -
Dod08g0142 344 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 24 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0142 Dod-Chr8 1584736 1587723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0142 45 342 C3H Transcription Factor Family AT4G26580 72.483 7.93e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0142 - - adu:107496222 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0142 08 1584736 1587723 Dod08g0142 08 1584736 1587723 ECH