Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0096 ATGAGCCAAACAAGCATGTCTTCAGCACGTGGTGATGATAATGGTGTCAACAATGATCTTGCTGCTAGCTTACTCCCCCCCACTAGAAAATACACGAAGATATGGCGTAGAACCTATTACATTGGGATCCTCATCTCTCTGAAGAAGTCAACGACTTCAAGTGGCAGCTCTGAATCTCCACCACCATCACCGCCATCATCTTCAGCACCGTACACTCCATTACCTCCATCTGAGCCTCCTGCATCTGCTACTGCTAGAACCTCATCTTCCAAGTCTTTTGTTGGAATTGACATAGCCTCTGATGCTGAGGAGGAGAAAGCGGAAGATGTCCTCAGGAGAATTGAAAGAATTGTGAAGGAGAAGGACTTGACGTCGCTTCTTGAGATTGGAGGGGTTGGCCGTGTTTGCTCAATTCTTGATCAACAACGCCAACAGAAGGGCATTGCTGATAATGGGAACCACACAGTACCAGTTCATGGAACAAGCTTCTCTACCTTTTTCGTGAATAGTTGCAAGCGCAACAGGTTCACAATTCCAATGCTGCTGGTCTCAGCTGTTTTGTCCTTCACAATAGAGATCAAGCAGGAGGGTCCTAGATATGGTTGGCATGATGGTGTTGCCATGTTGGTAGCTCTCAGCTTGATGGTAGTAATCCCTTCAATAGCAAACTTTTGGCGTCAAAGGTATATGATGAAATTGTCAAAGAGAAAGGACAAGTTGAAATTCAAGGTTCAAAGAGGTGAAGAGGGGCCCTTAAGCGTTGCCATATCTGACATTTTCGTGGGCGATATAGTGTCGCTGAGGATGGGTGATGAGGTTCCAGTAGAAGGGTTGTTTCTAAATGGTGAAAACTTTGTGCTGGATAAGGCAAGAAACAAAAGTGATTGTGAAGGAAACCCGTTTCTTATAGCTGGTTCAAAGGTAATTGAGGGTCATGGGAAGATGGTTGTAACATCAGCTGGAAACAAAAGGAACTTGGCTGAGATGCAAAACTCAATGAGTTGTAATCCTGAGAGAAGAGGCCTGTTGGATGATCGAATTGAGAAGCCAATTTCTTACATTGACAATTTTTCTCTTTTTGTCTTTGCATTGGTTGCAGCTGTGGTGCTAATTCGCCTAATTTGCAAAAAAGATGGGGACAGTGGTGGTTTACCAGATGTTAAGGGGAAGGTCTCAGTTGGATTGGTGATGGAAATCCTTGAGAGAACTATTTTGAGACCACAAGGAAAGATTTCCATTTTGACAGGTCTTGTTACTGTTTCAATACTGTGTATTCAGCACGGAATGCCACTCATGGTTGCAATTTCTCTCGGTTGCCAGATTGATCAGGAAGTGTCCCAAGATGCGGTTCATAATGATTTATCAGCTTGTACAACAATGGGGCTAGTTTCGGTCATCTGTGTCGATGCATCTGGAGGGCTCATATCCAAACCAATGGAGGTTACAAGAATCTGGATGGGGGATAAAGATATCATCATGGATATCAGCAAGGTCGAGGGATCAGAGGTTAATCAAGTTGTTCTTACTAAGCTTCAACAAGGAATTGGTTTATCAGTTCTTGTGCCGGAGCTTGCTCTTTCTCCAATGTCAAGGTCACTTATTTATTGGGCAGAAACAACTTGGGGAATGAAAATAGAGTCTTTTACAGAAGAATTTACAATTCTTAAGCACAGGAAACCGAATTCTGACAAAGAAGGCAGTGGGGTTCTGGTGAGAAAAGTTGGGCACAATGAACAAGATCTGCACTTGCACTGGAATGGGGCTGCATCCACAGTATTGGACATGTGTTCACAGTACTATGATAGTAAAGGGGAATGCCATGACATGATGGAAACTCAGAAAAGCAAATTTGAGCAGGTGATTAAGGAGATGGAAGATAGTGGTCTTAAGCCAATTGCATTTGCTCATAAACAAGCACAGGTGCCAGAACTTGAGCAAGATGAATTGATCTTGTTAGGACTGATTGGTCTCAAACAAACATGTCAGGGATCCATAAAAATGGCCTTCGAAGATCTAAGAAATGCTGGAATAAAGATCAAATTGGTCTCAGAGGATGATATCATGGTAGTGAAGGGCATAGCTTGTGAACTAGGAATAGAAGTGCCAGAAGATAGCATTTTGCTTGAAGGAAAAGAACTTCAAGATTTGAACGGCAGTGGCAGATTAGATCAGGTCGATCTAGCCCTTATAATGGGAAGTTTCAGCCTTGATGACATGCTGCTCATGGTAGAGTGCTTGCAAGAAAAAGGTCATGTGGTTGCATTTGTTGGAAGAAGGATGACAACTGGCCATGCTTCAGTTCTACAGATATCTGATGTAGGGATAGTCCACGATTCCCTGGGCACAATAACGGACAGAGAGAGTTCTGGAATAATTATCAAATGTTTGGATGCATTACCACTAATTGTGAGGGCTGGCAGAAGTAAATATAGCAATATTCAGAAGTTCATTCAGCTTCAGATCATCATTGGCATATCAGGGTCACTCATAACCTTCATTACTACAATTTTCACTGGGGGATCCCCGCTAACAGGATTCCAGTTGATCTGGGTGAATATGCTAATGTGCATGCTAGGTGGCCTAATGATGGGGATGAAGCTCAGTAATGACATTCAACCATCACACAGGAATCAGTCAATTATAACAAAAGAAATTTGGAAAAGCATAATTATTCAAGTTTCATATCAGATTTCAGTATCCATGATACTTGAATTTGGGGGACATATTTCTGACACAGAAAAAGTGGATAGGAAGACCATGATCTTCAACACTTTCCTGTTGTGCCAGGTGCTGGTGATTGAGTATGCAAATGGCCTAGCAAATTGCACAAGACTGAATGCTCCTCACTGGGCCATATGTGTCCTGGTTGGTGTTTTTTCTTGTGTGTTTGATTGGGCCTTGAAAAGTCTACTAGATATTCTCAGCACCAATTCTGCTTCTGCTTCAGAATCAAATGGATACTCTAACACGTCACATTGGGTCTATCTCACTTGGGGATTTCCATTTCTGATGCTCTTTTCGTTCCCTGTAATTATATTTGGCCAAATGATATTTCCATATAGTGGCTGA 3069 0.4239 MSQTSMSSARGDDNGVNNDLAASLLPPTRKYTKIWRRTYYIGILISLKKSTTSSGSSESPPPSPPSSSAPYTPLPPSEPPASATARTSSSKSFVGIDIASDAEEEKAEDVLRRIERIVKEKDLTSLLEIGGVGRVCSILDQQRQQKGIADNGNHTVPVHGTSFSTFFVNSCKRNRFTIPMLLVSAVLSFTIEIKQEGPRYGWHDGVAMLVALSLMVVIPSIANFWRQRYMMKLSKRKDKLKFKVQRGEEGPLSVAISDIFVGDIVSLRMGDEVPVEGLFLNGENFVLDKARNKSDCEGNPFLIAGSKVIEGHGKMVVTSAGNKRNLAEMQNSMSCNPERRGLLDDRIEKPISYIDNFSLFVFALVAAVVLIRLICKKDGDSGGLPDVKGKVSVGLVMEILERTILRPQGKISILTGLVTVSILCIQHGMPLMVAISLGCQIDQEVSQDAVHNDLSACTTMGLVSVICVDASGGLISKPMEVTRIWMGDKDIIMDISKVEGSEVNQVVLTKLQQGIGLSVLVPELALSPMSRSLIYWAETTWGMKIESFTEEFTILKHRKPNSDKEGSGVLVRKVGHNEQDLHLHWNGAASTVLDMCSQYYDSKGECHDMMETQKSKFEQVIKEMEDSGLKPIAFAHKQAQVPELEQDELILLGLIGLKQTCQGSIKMAFEDLRNAGIKIKLVSEDDIMVVKGIACELGIEVPEDSILLEGKELQDLNGSGRLDQVDLALIMGSFSLDDMLLMVECLQEKGHVVAFVGRRMTTGHASVLQISDVGIVHDSLGTITDRESSGIIIKCLDALPLIVRAGRSKYSNIQKFIQLQIIIGISGSLITFITTIFTGGSPLTGFQLIWVNMLMCMLGGLMMGMKLSNDIQPSHRNQSIITKEIWKSIIIQVSYQISVSMILEFGGHISDTEKVDRKTMIFNTFLLCQVLVIEYANGLANCTRLNAPHWAICVLVGVFSCVFDWALKSLLDILSTNSASASESNGYSNTSHWVYLTWGFPFLMLFSFPVIIFGQMIFPYSG* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0096 1022 Gene3D - 464 476 IPR023214 -
Dod08g0096 1022 ProSitePatterns EF-hand calcium-binding domain. 715 727 IPR018247 -
Dod08g0096 1022 Gene3D - 477 501 IPR023299 GO:0000166
Dod08g0096 1022 Gene3D - 791 918 - -
Dod08g0096 1022 MobiDBLite consensus disorder prediction 58 80 - -
Dod08g0096 1022 Gene3D - 153 334 - -
Dod08g0096 1022 PANTHER CATION-TRANSPORTING ATPASE PLANT 105 931 - -
Dod08g0096 1022 PANTHER CATION-TRANSPORTING ATPASE PLANT 929 986 - -
Dod08g0096 1022 Pfam E1-E2 ATPase 252 371 - -
Dod08g0096 1022 Pfam Cation transporting ATPase, C-terminus 841 932 IPR006068 -
Dod08g0096 1022 SUPERFAMILY Calcium ATPase, transduction domain A 250 330 IPR008250 -
Dod08g0096 1022 PANTHER CATION TRANSPORTING ATPASE 105 931 - -
Dod08g0096 1022 PANTHER CATION TRANSPORTING ATPASE 929 986 - -
Dod08g0096 1022 Coils Coil 100 120 - -
Dod08g0096 1022 SUPERFAMILY HAD-like 649 781 IPR036412 -
Dod08g0096 1022 Gene3D - 653 790 IPR023214 -
Dod08g0096 1022 MobiDBLite consensus disorder prediction 51 88 - -
Dod08g0096 1022 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 971 IPR023298 -
Dod08g0096 1022 MobiDBLite consensus disorder prediction 1 22 - -
Dod08g0096 1022 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 479 657 IPR023299 GO:0000166
Dod08g0096 1022 Gene3D - 525 652 IPR023299 GO:0000166
Dod08g0096 1022 Gene3D - 169 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0096 Dod-Chr8 992689 996565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0096 117 960 Primary Pumps ATPases AT3G63380 32.863 1.11e-130 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0096 K01537 - gmx:102661547 910.212