Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0087 ATGCTCCCTCCACGACAGCAGTCACGGGTTGGAGGACTACAAACGTCTCTTTCTCTGGTTTCTTCGGATCCTCGCCTGTCTCCTGAGGAACCTAGGTCAAACTCTGACAACCTCCGAGAATCTCCTACTGAGAGTGCCAGTTCTCGAGAAACTTGGCCTACTGCAGATACTATCGCTGCAAAGAAGATGGAGAATGGAAAAGCTGAGATTGATTGCCCTGAGCAGTCTGTTATTCGCCGTGTTTCTAGTGCAGACAAAATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATGTAATATGTGACAAAATGCATCATCTACCTGAGGAATTTCTAGAGGAGCTGAAAAATGGCCTTCGGGTCATTCTTGAGGGAGGGAATGGCTCACAGCATAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACTTTGATTAGAGCACATCGGGTGCAGCTTGAAATCCTTGTTGCCATAAATACCGGAATTCAGGGATTCTTACATCCTAGCATCAGCTTGTCACAGACTTCCCTAATTGAGATATTTGTGTATAAGAGATGCAGAAACATAGCTTGCCAAAGCCAGCTTCCAGCTGAAGATTGTACCTGTGAAACATGCACCAACAGTAATGGTTTCTGCAATCTTTGCATGTGTGTAGTCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGACTTGTGTTCTCACTGGACTCACACAGACTGTGCCATACGTGAGCAGCTTATTTGCATGGGCCCTTCTGTGAAGAGTGGTGCAGGAGTTAGTGAGATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTCTTGGGTTGGGTGAAAGATGTCTTCCAGCATTGTGCTCCTTCATGGGATGGGGAAGCCTTAATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGCAGTAAAGATCCACGGGGGAGGAAACTATATTGTAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTGGAAAGGTGGAATCTAAGGCAGCATGCAGGGCAATACTGATGGTTTTCCAAGAGCTTGAGATGGACTCTCCAAAGAGCCTGGGAAATGTGGAAGGTGGAAGACTGATTGCTCCTCAAGAGGCTTGCAATAGAATTGCTGAAGTGGTGCATGAGGCTATAAGAAAGATGGAAATAGTTGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATGGCGGTTGATGCTTGTGATCGTGAATTAGCTGACAAGGCCAGAGAAGCAGCAGAGCTCAAGATGGAGAGGCAGAAAAAGCAGTTACAGATTGAAGAATTGGAGAGAATTGTTAGGCTTAAAACTGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAAAGAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCAGACAAATCAGAGGAGGAATATACTAGCAACTATTTGAAACAAAGATTAAGTGAAGCTGAGGCTGAGAAGCAATATCTATATGAGAAGATCAAATTGCAGGAAAGTTCTCGTGTATCACAGAGTAGTAGCGGCGGCGGTGATCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAATGTTCCTCCCAAGGCAGACAGTCAGTCTAATGAGTGCCACCCTTTCAGAACAAATCCATGA 1707 0.4441 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNLRESPTESASSRETWPTADTIAAKKMENGKAEIDCPEQSVIRRVSSADKISLQDIARERVDVICDKMHHLPEEFLEELKNGLRVILEGGNGSQHREEFFILQKLVQSRSDLTAKTLIRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQSQLPAEDCTCETCTNSNGFCNLCMCVVCSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGAGVSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLYCKCDDLKEKLKSGKVESKAACRAILMVFQELEMDSPKSLGNVEGGRLIAPQEACNRIAEVVHEAIRKMEIVADEKMRMFKKARMAVDACDRELADKAREAAELKMERQKKQLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRVSQSSSGGGDPSSMLMYSKIHDLLYNVPPKADSQSNECHPFRTNP* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0087 568 MobiDBLite consensus disorder prediction 519 538 - -
Dod08g0087 568 Pfam Coiled-coil region of Oberon 413 547 IPR032535 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Dod08g0087 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Dod08g0087 568 SMART PHD_3 225 285 IPR001965 -
Dod08g0087 568 PIRSF UCP025218 1 555 IPR004082 -
Dod08g0087 568 MobiDBLite consensus disorder prediction 1 23 - -
Dod08g0087 568 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 559 IPR004082 -
Dod08g0087 568 MobiDBLite consensus disorder prediction 38 54 - -
Dod08g0087 568 PANTHER PROTEIN OBERON 2 1 559 - -
Dod08g0087 568 MobiDBLite consensus disorder prediction 1 54 - -
Dod08g0087 568 MobiDBLite consensus disorder prediction 519 535 - -
Dod08g0087 568 Coils Coil 419 488 - -
Dod08g0087 568 CDD PHD_OBE1_like 225 284 - -
Dod08g0087 568 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0087 Dod-Chr8 938189 941472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0087 195 297 PHD Gene Family AT5G57380 29.808 1.12e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0087 - - gmx:100795450 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0087 08 938189 941472 Dod08g0087 08 938189 941472 ECH