Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0085 ATGAGTTCTGAGAGGTGGATTGCTGAGTGGAATTCTGGGTTTGGTTCAGTTTTTGGTGAACAATTGAAGATTCATGGTTGGGGTGGTCGGTGGTCCTGTTGTTTCTTCAAGGCTCTGCTGAAGCTGGTGGGGCTTAACTTGAATCTTCAGGAGTGTTTGAGAAGAAGACACGTGGCTGAATTTTGGCAGAAAGGGATGTCTGTGAATCGAAGGCTTTCTGGATCAAATGGCAGATTGCCACTAAGTATGAAGCCTTGGAAGGCTAATGAGCCTTTGCATGGGTCTAATTCTCATAGGACATGGAGGAGGAAGCCTTTTCTCCTTTGGATTTTTTTGGGTGTTGTTGTAGCTATAGGAAGTGTCTGGTTTTTCTTGAGTTTCAATAGTAGTGAGTATTTGATGAGCAAGGAGAGAGAAGCAGCTTGTGAAGAGAGAGCAAGAATCTTGCTACAGCGTTACAATATCAGCAGGAAACAGCTCCATCCTTTGTCTTCCCTATTCTCTGGATCAGATCAGATTTTATCCAACTGTATTGATGAAAGGAGACTACAAATGCTGTTAAGCAGTGGCATAGCCAGCAGTCCACAGTTAGTGTGTCCAGAGAATCAGGAGTTACAAAAGGAGCATAGATGTTTTGCAGACACGGTAGAACCTATAGAACAATGCCCAATTCTCGATGATTATGTCCAGACAAGGCTTGAGTTATCATTCCTATTGGAAAAATATATACCATTGGCTTCACACTCTCTACTCTCGTCCAGTTTGGTTGATTGTTTGCTTTGCGGAAAGAACATTTTGCAGTCATGGGAACTGCAGGTCTTTGAAATTCTGGACAACATGAGTTCATCAAATTTGGGTAAAGGATGCTGGTGGGTCCTTATAGGAATTATAATGTCCTGCAACTTGTCTGGATTCTGTTTCCTATGGAGGAGTCAAAATAAGAAGCTAGTTCGTCAGCATCCAGTTGATCAGCAAAACCAGCTGCAACATTTTGCCCAGTGTCCTTCAAAAAGTGCTGGGAGTTGGAGGAAAAAATTGCTAGTAATATTTGTGTCACTTGGAATTGTTGGGTCCATTTGGTTATTCTGGCACTTAAATACGGGAATTATGCAGAGAAGAGAAGAAATGCTTGCCAATATGTGTGATGAGCGTGCCCGTATGCTGCAAGATCAGTTTAATGTCAGCATGAACCATGTTCATGCTCTGGCTATTCTTGTATCTACATTTCACCATGGTAAACATCCATCTGCAATTGACCAGAAAATTTTTGGAGAATATACTGAGAGTACAGCATTTGAGAGACCACTTACTAGTGGCGTTGCTTATGCTATGAAAGTTCTCCACTCTGACAGGATGGATTTTGAGAAGCAGCATGGGTGGACAATTAAGCAAATGGAAACTGAGAATGAAGCACTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCAGCACCTATTCAGGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTGTCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGCGAGCAAGGGCATCTGGCAAGGGGGTTCTGACATCTCCCTTCAAACTACTAAAATCCAACCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACTGTAATCTTCCAGCAGATGCTACACCAGAGCAGCGAATTGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCATCAACTTGCAAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACCAATGCATCTGCACCCATCACAATGTATGGCTCTGATGTTGCTGATACTGGCCTACTACATATAAGCAGTCTAGATTTTGGGGATCCACTACGAAAACACGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCGTTACCTTGGACAGCAATCAATGCATCGGTGGGGGTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATAAATCGAATAGCAAAGGTGGAGGATGACTATCGTGCAATGATGGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACGGTTTCACATGAGATCAGGACTCCAATGAATGGTGTACTAGGTATGCTGCAAATGTTGATGGACACTGACCTCAACGAGAACCAGATGGATTATGCCCAAACTGCCCATAAGAGTGGTAAAGATCTTATATCGGTGATAAGTGAGGTTCTGGATCAGGCTAAGATCGAAGCAGGCAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCACATGCTATTCTAGATGAAGTTCTGTCACTTTTCTCTGGAAAATCTAATGAAAAAGGAATTGAGTTGGCTGTTTATGCATCCAATCAAGTACCTGAAGTTGTCATTGGCGATCCTAAAAGGTTCCGACAAATAATTACTAATCTTGTGGGCAATTCACTCAAGTTCACTCATGATAAAGGACATGTCTTTGTCTCGATTCATCTGGCAAATGAAGTGAAGAACACGCCTCATATTATGGATGCAGTTCTGAGAGAAGGCTTGAAGTTGGATCAAGATATTTCAGACAGAACATATAATACATTAAGTGGGTTTCCTGTAGTCAACAGATGGGAAAGCTGGAAAGAGTTTAGGAAGTTAAGTAGTGTGAATTTGACGGATGAGCTTGAGATGATTCAACTTCTAGTAACTGTTGAGGATACAGGTATAGGAATTCCTAAGAAAGCACAAAGCCGTATATTCACACCTTTTATGCAGGCTGATAGTTCCACCTCCAGAACTTATGGTGGAACTGGAATAGGACTGAGCATCAGTAAATGTCTTGTTGACCTCATGGGAGGAGAAATTGGATTTGTTAGTGAGCTTGGAATTGGCAGTACTTTTTCATTTACATCAACTTTCAGAAGAGGAGAAGTCACATCTTTGGATGCGAAGTGGCAGAAACACAATCTTTTTGCTTCACAGTTGCAAGGGTTGAGAGCACTAGTGGTAGATAGAAGGAAAATCCGAGCTGAGGTCACAAGATATTATCTGCAGAGGTTGGGGATGTCTGTGGATGTTACTTTAAGCCTGAAATCTGCATGTTCTTGTCTATCAAGTACCTGCAACATGAGTATGTCATCACAGTTGGCCATGATTCTTATAGACAAGGATGCTTGGGATAAGGATAGTGTCTTATGCACTATCCAGAAACAAAGACGGAATGGCATCAAAGGAGACCCAAAAAACTTCCCAAAAGTTTTTCTCCTGGCCACCCACCTCAGCCCAAATGAACGTGATGAAATCACGTCAACTGGTGTTGTGGATGATGTACTAATGAAGCCACTTTGGCTTAGTATTTTGGTTCGGTGCTACAGAGAGTCCCTTGGAACTGAAAAAATGGAAATAAATAGGAAGAAAGTGTGCAAACTTGGGAAATTTTTATTACACAAAAAAATTTTGGTAGTTGATGATAATGCAGTGAACAGAAGAGTCGCACAAGGTGTTCTTCAGAAATATGGGGCAGTAGTTACTTGTGTGGAGAGTGGCCGGGCTGCTCTACGGATGCTAAAGCCACCACATGATTTTGATGCCTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGTGACAAGGAAAGTCCGCAGTCTTGAGAGCGAGGTAAATGAGAAAATTGCATGTGGGGGAGCATCAGCTGAGATGTTTGGTGATATCTCTTATTGGCACACTCCAATACTAGCAATGACGGCTGACGTAACTCAGGCTTCAAGTGAAGAGTGCATAAAGTGTGGGATGGATGGCTATGTGTCAAAGCCATTTGATGAAAAGCAGCTCTATATGGCAGTGGCACATTTCTTCAATTCTGGTTCATAG 3903 0.421 MSSERWIAEWNSGFGSVFGEQLKIHGWGGRWSCCFFKALLKLVGLNLNLQECLRRRHVAEFWQKGMSVNRRLSGSNGRLPLSMKPWKANEPLHGSNSHRTWRRKPFLLWIFLGVVVAIGSVWFFLSFNSSEYLMSKEREAACEERARILLQRYNISRKQLHPLSSLFSGSDQILSNCIDERRLQMLLSSGIASSPQLVCPENQELQKEHRCFADTVEPIEQCPILDDYVQTRLELSFLLEKYIPLASHSLLSSSLVDCLLCGKNILQSWELQVFEILDNMSSSNLGKGCWWVLIGIIMSCNLSGFCFLWRSQNKKLVRQHPVDQQNQLQHFAQCPSKSAGSWRKKLLVIFVSLGIVGSIWLFWHLNTGIMQRREEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYAMKVLHSDRMDFEKQHGWTIKQMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNCNLPADATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGSDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFYAAINRIAKVEDDYRAMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLNENQMDYAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPHAILDEVLSLFSGKSNEKGIELAVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLANEVKNTPHIMDAVLREGLKLDQDISDRTYNTLSGFPVVNRWESWKEFRKLSSVNLTDELEMIQLLVTVEDTGIGIPKKAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSELGIGSTFSFTSTFRRGEVTSLDAKWQKHNLFASQLQGLRALVVDRRKIRAEVTRYYLQRLGMSVDVTLSLKSACSCLSSTCNMSMSSQLAMILIDKDAWDKDSVLCTIQKQRRNGIKGDPKNFPKVFLLATHLSPNERDEITSTGVVDDVLMKPLWLSILVRCYRESLGTEKMEINRKKVCKLGKFLLHKKILVVDDNAVNRRVAQGVLQKYGAVVTCVESGRAALRMLKPPHDFDACFMDLQMPEMDGFEVTRKVRSLESEVNEKIACGGASAEMFGDISYWHTPILAMTADVTQASSEECIKCGMDGYVSKPFDEKQLYMAVAHFFNSGS* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0085 1300 Gene3D - 763 984 IPR036890 -
Dod08g0085 1300 ProSiteProfiles CHASE domain profile. 414 638 IPR006189 -
Dod08g0085 1300 PANTHER TWO-COMPONENT HISTIDINE KINASE 331 1297 - -
Dod08g0085 1300 Gene3D CHASE domain 418 645 IPR042240 -
Dod08g0085 1300 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 684 765 IPR036097 GO:0000155|GO:0007165
Dod08g0085 1300 PANTHER HISTIDINE KINASE 2 331 1297 - -
Dod08g0085 1300 CDD HATPase_EvgS-ArcB-TorS-like 816 978 - -
Dod08g0085 1300 Pfam Response regulator receiver domain 1160 1292 IPR001789 GO:0000160
Dod08g0085 1300 Gene3D - 670 762 - -
Dod08g0085 1300 Pfam CHASE domain 417 611 IPR006189 -
Dod08g0085 1300 SMART HKATPase_4 811 983 IPR003594 -
Dod08g0085 1300 Gene3D - 365 417 - -
Dod08g0085 1300 Gene3D - 133 170 - -
Dod08g0085 1300 CDD HisKA 699 760 IPR003661 GO:0000155|GO:0007165
Dod08g0085 1300 SMART REC_2 1158 1292 IPR001789 GO:0000160
Dod08g0085 1300 SMART HisKA_10 699 764 IPR003661 GO:0000155|GO:0007165
Dod08g0085 1300 ProSiteProfiles Response regulatory domain profile. 1159 1296 IPR001789 GO:0000160
Dod08g0085 1300 PANTHER TWO-COMPONENT HISTIDINE KINASE 95 168 - -
Dod08g0085 1300 CDD REC_hyHK_CKI1_RcsC-like 1160 1292 - -
Dod08g0085 1300 SUPERFAMILY CheY-like 1157 1296 IPR011006 -
Dod08g0085 1300 Gene3D - 999 1141 - -
Dod08g0085 1300 PANTHER HISTIDINE KINASE 2 95 168 - -
Dod08g0085 1300 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 754 978 IPR036890 -
Dod08g0085 1300 ProSiteProfiles Response regulatory domain profile. 1007 1136 IPR001789 GO:0000160
Dod08g0085 1300 Gene3D - 1157 1299 - -
Dod08g0085 1300 SMART CHASE_2 414 613 IPR006189 -
Dod08g0085 1300 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 811 978 IPR003594 -
Dod08g0085 1300 PRINTS Bacterial sensor protein C-terminal signature 908 922 IPR004358 GO:0016310|GO:0016772
Dod08g0085 1300 PRINTS Bacterial sensor protein C-terminal signature 967 980 IPR004358 GO:0016310|GO:0016772
Dod08g0085 1300 PRINTS Bacterial sensor protein C-terminal signature 943 961 IPR004358 GO:0016310|GO:0016772
Dod08g0085 1300 PRINTS Bacterial sensor protein C-terminal signature 926 936 IPR004358 GO:0016310|GO:0016772
Dod08g0085 1300 SUPERFAMILY CheY-like 1002 1136 IPR011006 -
Dod08g0085 1300 Pfam His Kinase A (phospho-acceptor) domain 699 764 IPR003661 GO:0000155|GO:0007165
Dod08g0085 1300 ProSiteProfiles Histidine kinase domain profile. 706 983 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0085 Dod-Chr8 918718 928716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0085 101 245 Miscellaneous Gene Families AT5G35750 28.481 1.97e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod08g0085 CHASE 3.4e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0085 K14489 - gmx:100805107 1995.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0085 08 918718 928716 Dod08g0085 08 918718 928716 ECH