Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0077 ATGCAAGCGGATAATGGCAAGTTATTCATTGGTGGGATATCCTGGGACACGAATGAGGAGCGACTCAGGGAGTATTTCAGCACTTACGGAGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTCTCAGACCCAGCTGTGGCAGAAGTAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTAACGGAAAGCGACTTCAAGACATACTTTGATCAGTTTGGGACTATAACGGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTCTTACTTAAGACTTTCCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCTGTTCCTAAGGAGTTATCCCCAGGACCAAGCCGCAGCCCACTTGGTGGATATAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATAGTCCAAGTACTGTTGGAGGCTATGGACTTCGGGTTGATGGTAGATTCAGTCCTGTTGCTGGTCGAAGCGGATTTGCTTCATTTGGATCTGGTTATGGAATGAGTATGAATTTTGAGCCTGGTTTGGGTGCTGGATTTGGGAGCAATGCAAATTTCAATAGTAACCTTGGCTATGGTCGGGGATTGAATCCTTATTATATTGGCAGCTCCAATAGGTTTGGCAGCCCTGTTGGATACGACAGTGGTAATGGAGGAAACAATTCCTTTTTCAGCTCTGCTACCCGTAATTTGTGGGGGAATGGTGGCCTCAATTATGGAACAAATTCTGCAAATTCCAGTGCATACCTTGGATCAGGGAGTGGGGATGTTGGAGGAAACACACTTGGCAATAATGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAAGGGGGCGGGAACAATGTGCTGCAGAGCAGTGGCAACCTTGGCTATGGTGGTGGTGACAACAGTTATGGTTTGGGAACTGGAGGGTATGGGAGAAGCAGTAGTTCTGCTATTGCCCCAACATCTTCATACACTGCATCAAATGGTGGTGTTGATGGTGCTTTTGCTGATTTCTACAATAATAGTTCAGCTTATGGGGACCCCACTTGGCGTTCTTCTAATTCTGAGCGAGATGGATCTGGTCCCTTCAGTTATGGACTTGGTGGTTCAGCTGCAGATGTTGCTGGCAAAAGTTCTCCTGGTTATGTTGGTGGTTATACTATTAATAAGAGGCAGCCAAATAGGGGAATTGCTACCTAG 1434 0.4554 MQADNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEVVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRVDGRFSPVAGRSGFASFGSGYGMSMNFEPGLGAGFGSNANFNSNLGYGRGLNPYYIGSSNRFGSPVGYDSGNGGNNSFFSSATRNLWGNGGLNYGTNSANSSAYLGSGSGDVGGNTLGNNGVNWGSSAISGQGGGNNVLQSSGNLGYGGGDNSYGLGTGGYGRSSSSAIAPTSSYTASNGGVDGAFADFYNNSSAYGDPTWRSSNSERDGSGPFSYGLGGSAADVAGKSSPGYVGGYTINKRQPNRGIAT* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0077 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 477 - -
Dod08g0077 477 Gene3D - 103 189 IPR012677 -
Dod08g0077 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Dod08g0077 477 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Dod08g0077 477 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Dod08g0077 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dod08g0077 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Dod08g0077 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Dod08g0077 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Dod08g0077 477 MobiDBLite consensus disorder prediction 456 477 - -
Dod08g0077 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Dod08g0077 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Dod08g0077 477 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Dod08g0077 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Dod08g0077 477 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0077 Dod-Chr8 864850 869273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0077 8 267 Eukaryotic Initiation Factors Gene Family AT1G71770 27.723 5.14e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0077 K14411 - gmx:100795907 831.247