Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0052 ATGGCGGATTCCGACAACGAATCGGGCGGGAATCCTAACAACAGCAACCATGGAGGAGGAGAATTGTCGGCGAAGGAACAGGACCGGTTCCTGCCGATAGCGAACGTGAGCCGGATAATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACGGGGGAGGCATCGGACAAGTGCCAGCGCGAGAAGAGGAAAACAATCAACGGCGACGATTTGCTGTGGGCCATGACCACCCTTGGATTCGAGGAGTACGTGGAGCCCTTGAAGGCTTACCTCCACAGGTACAGGGAGATGGAAGGGGACAAGGCCTCTTCTGTCGGAAGGCAGCAGGGCGAGAAGGACACTCCTCCTCCTGCAACTGCTTCTGGAGACTTCAACGGGATGATGATGATGGGGCATTATCATCCAGGGCAGGTGTATACTCATGCTCATGCTGCTGGGTTTCATCACTCTGCCGGAACCGGTGGTGCAAACGCCAGGACTAGGTAG 543 0.5672 MADSDNESGGNPNNSNHGGGELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKAYLHRYREMEGDKASSVGRQQGEKDTPPPATASGDFNGMMMMGHYHPGQVYTHAHAAGFHHSAGTGGANARTR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0052 180 MobiDBLite consensus disorder prediction 120 142 - -
Dod08g0052 180 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod08g0052 180 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Dod08g0052 180 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Dod08g0052 180 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Dod08g0052 180 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982
Dod08g0052 180 Gene3D Histone, subunit A 20 140 IPR009072 GO:0046982
Dod08g0052 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod08g0052 180 MobiDBLite consensus disorder prediction 1 21 - -
Dod08g0052 180 MobiDBLite consensus disorder prediction 1 27 - -
Dod08g0052 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 159 - -
Dod08g0052 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0052 Dod-Chr8 658971 659865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0052 1 169 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.639 4.79e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod08g0052 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0052 K08065 - pop:7469329 226.483