Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0033 ATGGAGAGTGAGATGCAACAGTTGCTGAGCATGGGCTTCCCAGACGAGTTAGCCGCCCAAGCATTGGCTGCCACTGGGGGCAAATCCACCGTCAAGGCCACCGAATGGATCCTCACCCACAAATCCAACAACAACCACCCTTCACCCTCTCCTCCTGCACCTGCACCTGCACCACCACCACCACCCCCCTTTCAGCCCAAGCTCGACCGCTTCTTCCTCACCCCGCCCAAGCATTCCACAACCCAACCGCCAATCGACCTAGACCAGCCACAAGAGCAAGAGGAACCAGCAGCCCCATTACCCAAACGCCTCAGACCATTTCCCTCATCCACTTCCACTTCCACGCCTCAATCTTCCTTCTTCTTCAACCCCCTTCGCCACTCCAAGAAACAACCCCACGAACCCTTATATGAGCGCCTCCGCCCCAAAACCTTGGACGACGTCGTTGGCCAGGACCATCTCCTTTCCTCCAGCTCCCTCCTCCGATCCGCCATCCACCGCAACCGCCTCCCCTCCATCCTCCTCTGGGGTCCCCCCGGCACCGGCAAGACCACCATCGCCAGAGCCATCGTCAACTCCTGTCACAAACAACAACAACAACAACAACAATGCCCTTGTTACCGCTTCGTCTCCCTCTCCGCCGTCACGAGTGGCGTCAAAGACGTGAGGGACGCTGTTGATGAGGCCAGGAAGCTCAGAGTTAAAAGCAACCAGAGAACCGTTCTGTTTGTTGACGAGGTTCACAGGTTCAACAAGTCTCAGCAGGACTCGTTCTTGCCCGTCATCGAAGATGGCAGCATTGTGTTCGTTGGAGCCACCACTGAGAACCCTTCCTTCCATCTGATCACGCCTCTCTTGTCTCGATGCCGCGTCCTTACCCTTCACCCTCTTAAGCCCCACCATGTTGCTCTGCTTCTGAACAGGGCCGTGAGTGACTCAGAGAGAGGCTTGGTGCAGAGCGTTGGTTGTAAAGTTGATGTTAGCGAGGATGTGGTGGATTTTATAGGCAACAATTGTGATGGGGATGCTCGTGTGGCCTTGAATTCTTTGGAGATTGCTGCTGTCACCGCAGCTGCACGTGTGCAACATGCAAAGGAGGAAGATAACCAGACAAAAAACGAGGTTGGTCTTGGTCCCTCTTCTCCTGCTGTTGCTGTTGTTACCCTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCATCTTGCTTATGACAAGGATGGGGAAGAGCACTATAATCTGATTAGTGCACTGCATAAATCCATGAGAGGGAGTGATGCTGATGCGGCGATTTATTGGCTGGCAAGAATGTTAGAAGGAGGTGAAGAGCCACTCTACATTGCACGCAGGCTCATAAGGTTTGCAAGTGAGGATGTTGGTCTGGCCGATCCTTCAGCTCTTACTCAGGCTGTATCCTGCTATCAAGGCTGCCACTTCTTGGGAATGCCAGAGTGCAATGTCATCCTTGCGCAGTGTGTTGCTTACTTGGCTTTGGCTCCTAAATCCGTCTCGGTTTATAGAGCAATAGGAGCAGCTCAGAAGGTAGTGAGGGAATCGGTTGGACAGAATGAAGGGGTGCCCCTTCACCTGAGGAATGCGCCAACCAAATTGATGAAGGAAATTGGGTATGGGGAGGGATACATTTACCCTCCTGACAATCCCTCCTCAACACAGAGCTATTTGCCACCCTCACTTGAAGGGTACAAGTTCCTCGATTGGCCTCACAGCAGGAATGGGTCTGATGAAGGAAAATAA 1752 0.5314 MESEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNNNHPSPSPPAPAPAPPPPPPFQPKLDRFFLTPPKHSTTQPPIDLDQPQEQEEPAAPLPKRLRPFPSSTSTSTPQSSFFFNPLRHSKKQPHEPLYERLRPKTLDDVVGQDHLLSSSSLLRSAIHRNRLPSILLWGPPGTGKTTIARAIVNSCHKQQQQQQQCPCYRFVSLSAVTSGVKDVRDAVDEARKLRVKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLHPLKPHHVALLLNRAVSDSERGLVQSVGCKVDVSEDVVDFIGNNCDGDARVALNSLEIAAVTAAARVQHAKEEDNQTKNEVGLGPSSPAVAVVTLDDAKEALQCKHLAYDKDGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALTQAVSCYQGCHFLGMPECNVILAQCVAYLALAPKSVSVYRAIGAAQKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGEGYIYPPDNPSSTQSYLPPSLEGYKFLDWPHSRNGSDEGK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0033 583 Pfam UBA/TS-N domain 2 37 IPR015940 -
Dod08g0033 583 SUPERFAMILY UBA-like 2 51 IPR009060 GO:0005515
Dod08g0033 583 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 17 576 - -
Dod08g0033 583 Coils Coil 347 367 - -
Dod08g0033 583 Pfam MgsA AAA+ ATPase C terminal 423 571 IPR021886 -
Dod08g0033 583 Pfam ATPase family associated with various cellular activities (AAA) 173 291 IPR003959 GO:0005524|GO:0016887
Dod08g0033 583 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 40 IPR015940 -
Dod08g0033 583 Gene3D - 501 580 - -
Dod08g0033 583 SUPERFAMILY post-AAA+ oligomerization domain-like 407 572 IPR008921 GO:0003677|GO:0006260
Dod08g0033 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 369 IPR027417 -
Dod08g0033 583 Pfam AAA C-terminal domain 324 422 IPR032423 -
Dod08g0033 583 SMART uba_6 1 39 IPR015940 -
Dod08g0033 583 SMART AAA_5 169 297 IPR003593 -
Dod08g0033 583 MobiDBLite consensus disorder prediction 106 125 - -
Dod08g0033 583 CDD AAA 162 290 - -
Dod08g0033 583 Gene3D - 125 295 IPR027417 -
Dod08g0033 583 MobiDBLite consensus disorder prediction 24 133 - -
Dod08g0033 583 Gene3D - 1 56 - -
Dod08g0033 583 CDD HLD_clamp_RarA 297 397 - -
Dod08g0033 583 Gene3D - 297 373 - -
Dod08g0033 583 Gene3D - 397 500 - -
Dod08g0033 583 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0033 Dod-Chr8 549710 551941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0033 135 423 Core DNA Replication Machinery Family AT1G77470 26.689 9.63e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0033 K07478 - gmx:100799257 794.653