Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0029 ATGAGAAGTTTACTTCCCCAGGGGAGCTTCAGGGTAAGAACTGCTCCCCATGATTGCGAAAAGACAGTTCTCATAGTTCCTGATACTCCCCCATCCGATGCTCCTTTGGATAAGCCTTCTACTTCAAGGTCCCTCTCCCTTAATGGTAAGGGTTTATTCTCTCCATCGGCAAAGGCTGCACATTCGCTACCGGTTACACCAATTGCAACTTCAGGTGCAGAGAATGCACATGGCAGATATATAGGATGTGATTCTGATTCAAGTACAATGGCAGCTAAGCAGCATATGACTCGATCGCTCTCGGTTCCAGTTGATGGCAAAGCCACTAATTTAAGGCGCACAGATTCTGGGGTATTGATTCGTGTAATATCTGCAAAACCACATCGTGAAATTGCTGATGGAACTTCAACTAGTGATGCTTCAGTTTTGGAGATAGCCACTGGGAATTCTACTGAGGATATTCCAGAGGAAGAAGCGGTTTGTAGGATTTGTTTGGCAGAGCTTGGGGAAGGAGGGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAAGGAAACAGGACCTGCGATGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGCTGAAAATTTATAATCCTCAAACTTCTGCTGGCCCCGCGCTGCCATCGAATGTGCCACAACAGAGAGAAATAGCTTCTTACAGGATCTGGAAGGACGTACCAGTACTAGTCTTGGTCAGCATGCTTGCTTACTTTTGCTTTTTGGAGCAACTACTGGTTTCGGATTTGGGACCTCGTGCTTTAGCCATTTCATTACCTTTCTCCTGCGTTTTAGGTCTCCTTTCATCTATGATTGCATCAACCATGGTGAGCAGGAGTTTCATATGGGCCTATGCTTGCTTCCAGTTTGCAATTCTCATCCTGTTTGCTCATGTATTTTATAATATCCTCAACGTGAACCCGGTTCTGTCCATTCTCCTTTCCTCATTCACTGCATTTGGGATCACAATCAGCATGAACTCTCTCCTTTTCGAGTATATTAGATGGAGAGCAAGTAGGCAGATTCAGTCATCCAATCAGAATGTTAACAGGACAGAGCAGCAGCGGCGTGATCATGTCCAACAAGATGAGGAGCAGCATCATCAACGGCAAAGACAGCAGCAGCAAGAGCAACATCGATGA 1218 0.4524 MRSLLPQGSFRVRTAPHDCEKTVLIVPDTPPSDAPLDKPSTSRSLSLNGKGLFSPSAKAAHSLPVTPIATSGAENAHGRYIGCDSDSSTMAAKQHMTRSLSVPVDGKATNLRRTDSGVLIRVISAKPHREIADGTSTSDASVLEIATGNSTEDIPEEEAVCRICLAELGEGGNTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQTSAGPALPSNVPQQREIASYRIWKDVPVLVLVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFIWAYACFQFAILILFAHVFYNILNVNPVLSILLSSFTAFGITISMNSLLFEYIRWRASRQIQSSNQNVNRTEQQRRDHVQQDEEQHHQRQRQQQQEQHR* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0029 405 Pfam RING-variant domain 161 208 IPR011016 GO:0008270
Dod08g0029 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 216 IPR013083 -
Dod08g0029 405 Coils Coil 367 387 - -
Dod08g0029 405 PANTHER OS02G0165000 PROTEIN 1 389 - -
Dod08g0029 405 PANTHER OS02G0165000 PROTEIN 1 389 - -
Dod08g0029 405 CDD RING_CH-C4HC3_MARCH 161 209 - -
Dod08g0029 405 MobiDBLite consensus disorder prediction 370 405 - -
Dod08g0029 405 MobiDBLite consensus disorder prediction 24 43 - -
Dod08g0029 405 SUPERFAMILY RING/U-box 157 212 - -
Dod08g0029 405 MobiDBLite consensus disorder prediction 377 405 - -
Dod08g0029 405 ProSiteProfiles Zinc finger RING-CH-type profile. 153 215 IPR011016 GO:0008270
Dod08g0029 405 SMART ringv_2 160 209 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0029 Dod-Chr8 516334 521569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0029 155 267 C3H Transcription Factor Family AT2G37950 32.258 4.46e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0029 - - ahf:112765571 591.652