Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0017 ATGAACAACTCCGCCGATTCTGATCCTCCTGACACTGACACTGACACTGATCATGATCATGATCATGCATTCGTGGTTGGTGTTGGGGTTGCTGCTTCTTCATCGTCCTCTTCTCTGACTCGGATTCGCAACCCTCGTAAGAAGCGCACCAAATTGATCACGATAATGGACGAGCGCAGCAGCAGCAGCAGCGCTGGGGCGAGGGTGAAGGCCTACAAGAGGCCAGACCCGGGCGCCTCGAAGATCACGCTGCCCTGCACCGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCTCTCTTCGGCCACATGCGCTGCCACCCTGAGCGCCCGTGGCGAGGGATCAATCCTCCCCCCAGCCTCCTCAAACGACAACAGCCTCCTCCTCAAGTGCAGGTGCAACAAGATCACATGACCGACAAGGACCACGAGGCTGCCGAGTGTCTGCTGTTGCTCGCGAGTGGCAAGGAGAAGGAGAAGGAGAAGGTTAACCAACATGTATGCGGAGCCGTCACCTTGGACGTGGACCTCGAGCGTCCCGGTGATCATCATCATCATCATGAGGAACGATTCGAGTGCTCCAGTTGCAAGAAGGTGTTTGGATCTCACCAGGCGCTGGGGGGCCACAGGGCCAGCCACAAGAACGTCAAAGGCTGCTTCGCCATCACCGCAGATCACGCCTCCACTTCTTCTGTGATCGCTGACGCTGACCACGACCACATCAACGATAGCAGTGCGGGTGGGGATGGCAGCGGAGGACACAAGTGTAGCATATGCCTGAGGGTGTTCTCCACCGGACAAGCTCTCGATCGGTGGCCACAAGAGGTGTCACTGGGAAAAAGCCGACGCTATGGTTGCGCCTGCCCCCTCGGATGGATGCGTGGCTGTTGA 888 0.5788 MNNSADSDPPDTDTDTDHDHDHAFVVGVGVAASSSSSSLTRIRNPRKKRTKLITIMDERSSSSSAGARVKAYKRPDPGASKITLPCTECGKKFWSWKALFGHMRCHPERPWRGINPPPSLLKRQQPPPQVQVQQDHMTDKDHEAAECLLLLASGKEKEKEKVNQHVCGAVTLDVDLERPGDHHHHHEERFECSSCKKVFGSHQALGGHRASHKNVKGCFAITADHASTSSVIADADHDHINDSSAGGDGSGGHKCSICLRVFSTGQALDRWPQEVSLGKSRRYGCACPLGWMRGC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0017 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Dod08g0017 295 Pfam C2H2-type zinc finger 253 268 - -
Dod08g0017 295 Pfam C2H2-type zinc finger 86 108 - -
Dod08g0017 295 Pfam C2H2-type zinc finger 189 213 - -
Dod08g0017 295 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Dod08g0017 295 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 268 - -
Dod08g0017 295 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Dod08g0017 295 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 36 268 - -
Dod08g0017 295 MobiDBLite consensus disorder prediction 1 22 - -
Dod08g0017 295 SUPERFAMILY beta-beta-alpha zinc fingers 85 108 IPR036236 -
Dod08g0017 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Dod08g0017 295 SMART c2h2final6 190 212 IPR013087 -
Dod08g0017 295 SMART c2h2final6 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0017 Dod-Chr8 420910 421797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0017 45 268 C2H2 Transcription Factor Family AT4G35280 50.000 2.17e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g0017 zf-C2H2_6 7.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0017 - - qlo:115967199 238.81