Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0016 ATGGAATACGGTGGTGCTGGCATAGTGCACAATTCATCAGCGTTAATTGGGAGCTTGTCAGAGTTTAAGTCTGTCGAAACGGCAGAAGGAGATTTCATTGATGAGCTGCTAGTAGAAGGTTGCTGGCTGGAAACCACAGCAGGCGGGTCCTACAACTTCATGCACCCATCGTGTGACAGCCTCGCCCTCGCAGACCCTTCTCCACATCACTACTTGCCATTGCCAGCTTCTGAAATGCCAGACGAGAATTTTGTGGCGGGGAAGAGGTGGTGGATTGGGCCGAGGGCGAATCCTGGGCCCTCTTCCTCCGTGAAAGAGAGGCTAATGGTTGCCGTGGGGTACTTGAGAGAGTACACCAAGAACACCAATGTGCTGATTCAGATATGGGTGCCCCCTGCAGCTGCTGCTGCTGCACGCAGAGGGCTCCATCTCGATTATCACTACCACCACACAATCAATGATCATGAGACACTGCCGGCGGTTGGTTTTCCCATGAGTCCCACTCCCAACCCCAACCCTAATGTCAACGCTCGGTTCTTCAGAAGCCATGATTACCCGCGCGTTCATTATGAGCAGGCGCAGCAGCAGCAGTACGATGCTCGTGGATCTTTGGCACTTCCCGTCTTCGAACGCGGAACTGGGACATGCCTTGGAGTCCTCGAGATTCTCATCGCCAACCAACACTTCTTCAACTATCGCCCGCAACTTGACAATCTCTGCAATGCCCTCGAGGTATTTGATGAGTTGTACCAAGCAGCACTGAACGAGATTGTAGAGGTGTTGACGTCGGTGTGCAAGGCGCACAATTTGCCTTTAGCTCTGACATGGGCTCCTTGCATCCAACAAGGAAAGTGCGGGTGCGGCCCCTCGTCATCACCGGATGCGTGTTGCGTGTCCACCGTGGACTCTGCGTGCTTTGTGGCCGACCTAGACATACTGGGCTTCCAGGAAGCGTGCTCGGAGTACCACCTCTTCCGGGGGCAAGGGATAGTTGGAACAGCCTTCACAACAACGAAGCCGTGTTTCGCAATCGACATAACTGCGTTCAGCAAAGCAGAATACCCTCTGGCTCACCACGCCAAGATGTTTGGCCTGCACGCCGCCGTGGCCATTCCCCTGCGCAGTGTCTACACCGGTTCCTCCGCTGATTTCGTGTTGGAGTTTTTCCTTCCCAAGGACTGCCATGACAGCGAAGAGCAGAAGCATATGCTCAATTCGCTGTCCATGCTGGTCCAGCAAGCTTGCCGAAGCCTGCATGTTGCCGCGGAGGACGAGTTAGCGTGGCCAGTACCGCCACCGCCAGACGACAGAGAAGAAGCCCATCATCATCATCATCATCATCATCACGACGATCATCACAAGCTGCTGTTTGCATGCCCCAGCTCGCAGCCACAGCCACAGCCACAGCCACAGCGGCAGATGGAAGAGGCGTGTTCGAAGGAGTCGTCGTCGTCGTGGATTGCGCACATGATGGAGGCGCAGGTGCAACAGAAGGGGAAAGGCGTGTGTGTGTCGCTGGAGTACCAGCTGGAAGAGCCCAAAGAGGAGTTCAAGGTGACCACCAACTGGGACACCATCAAGGAGCACGGGCAGGTCTTTTCGGATTTCGAGCACATTGAGATTGAGCAGAGTTCAGTGTCAGGGTCGGGGTCGGGGTCGGGGTCAGGGTCCAGGGCAAGCGCGGAGGGTGCAGGCGGTGAAGAGTGTTATGCATTTGGCGGGCGCCGCTCGTCGTCGGCTTCTGGTGGCAGAAAGTCAGGCGACAAGAGACGAACCAAGGCTGAGAAGACTATCAGCTTGCCCGTCCTTCGACAGTACTTTGCGGGAAGCCTAAAAGATGCTGCTAAGAGCATTGGCGTGTGCCCGACAACTCTGAAAAGGATATGCAGGCAGCATGGGATAACGAGGTGGCCATCGAGGAAAATAAAGAAGGTAGGGCACTCATTGAAGAAACTTCAGCTGGTGATCGATTCAGTGCAGGGCGCAGAGGGTGCCATTCAGATTGGCTCCTTCTATGCCAGCTTCCCGGAGTTGAGCTCCGCAGATTGTGGGCGATCCGATCAATCATCCAAGAAAGTAGTGCACAGTGGCGGCAGCTTGTATGGTAATGGCAATGGAGATGGAGGAGCAGCCGCTGCCAATACCTTAAAATCCCCACCATCTGCATGCAGCCAGTCTACTCTTGGTGCAAGTGCAGGAAACCAGCTGGCTTCCACTGTGATGATGAACACAATGTCCGGAGGAGGAGGAGATGTTGCAATGACGCAAGAGATCAGCTGTGATGCAGCATCGCTGCTCAATAGGTCAGCTCACAGCGCTGAGGCAGAGTTGCAGCATGCATCATCAGCACCAATCCAACTCCAAGATCAGGCCACAAAGCATTTCACCACCACCCGATCCAAGACAACCCACTCTCAACCTCCCTTGTCTGCCTGGAACTCGCGAGACAGGGGTGCCTTCAGGGTCAAAGCTACTTTTGTGGATGAAAAGATCCGATTCAGCTTGCAACCAAACTGGGGGATCAGAGATTTGCAGCTTGAGATTGCAAGGCGCTTCAATCTAAACGATATCAGCAACATGGACATCAAGTATTTGGATGACGATGGGGAGTGGGTCCTCTTAGCATGCGATGCAGATCTTGAGGAGTGTAAGGACATACATAGATCATCTCAGAGCCGCACCATTAGGCTCTCCCTCTTTCAGGCTTCGCCTCTCAACCTACCAAATACCTTTGGCAGCAGCAGCAGCCCATCCTAA 2757 0.5419 MEYGGAGIVHNSSALIGSLSEFKSVETAEGDFIDELLVEGCWLETTAGGSYNFMHPSCDSLALADPSPHHYLPLPASEMPDENFVAGKRWWIGPRANPGPSSSVKERLMVAVGYLREYTKNTNVLIQIWVPPAAAAAARRGLHLDYHYHHTINDHETLPAVGFPMSPTPNPNPNVNARFFRSHDYPRVHYEQAQQQQYDARGSLALPVFERGTGTCLGVLEILIANQHFFNYRPQLDNLCNALEVFDELYQAALNEIVEVLTSVCKAHNLPLALTWAPCIQQGKCGCGPSSSPDACCVSTVDSACFVADLDILGFQEACSEYHLFRGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHAKMFGLHAAVAIPLRSVYTGSSADFVLEFFLPKDCHDSEEQKHMLNSLSMLVQQACRSLHVAAEDELAWPVPPPPDDREEAHHHHHHHHHDDHHKLLFACPSSQPQPQPQPQRQMEEACSKESSSSWIAHMMEAQVQQKGKGVCVSLEYQLEEPKEEFKVTTNWDTIKEHGQVFSDFEHIEIEQSSVSGSGSGSGSGSRASAEGAGGEECYAFGGRRSSSASGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSADCGRSDQSSKKVVHSGGSLYGNGNGDGGAAAANTLKSPPSACSQSTLGASAGNQLASTVMMNTMSGGGGDVAMTQEISCDAASLLNRSAHSAEAELQHASSAPIQLQDQATKHFTTTRSKTTHSQPPLSAWNSRDRGAFRVKATFVDEKIRFSLQPNWGIRDLQLEIARRFNLNDISNMDIKYLDDDGEWVLLACDADLEECKDIHRSSQSRTIRLSLFQASPLNLPNTFGSSSSPS* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0016 918 PANTHER PROTEIN NLP2 32 913 - -
Dod08g0016 918 CDD PB1_NLP 820 901 IPR034891 -
Dod08g0016 918 MobiDBLite consensus disorder prediction 543 594 - -
Dod08g0016 918 MobiDBLite consensus disorder prediction 468 483 - -
Dod08g0016 918 ProSiteProfiles RWP-RK domain profile. 584 665 IPR003035 -
Dod08g0016 918 Pfam RWP-RK domain 598 645 IPR003035 -
Dod08g0016 918 PANTHER PROTEIN NLP8 32 913 IPR045012 GO:0003700
Dod08g0016 918 MobiDBLite consensus disorder prediction 428 483 - -
Dod08g0016 918 MobiDBLite consensus disorder prediction 543 558 - -
Dod08g0016 918 SUPERFAMILY CAD & PB1 domains 812 904 - -
Dod08g0016 918 Gene3D - 820 902 - -
Dod08g0016 918 SMART PB1_new 819 902 IPR000270 GO:0005515
Dod08g0016 918 ProSiteProfiles PB1 domain profile. 819 902 IPR000270 GO:0005515
Dod08g0016 918 Pfam PB1 domain 820 901 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0016 Dod-Chr8 385068 390218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0016 31 913 NLP Transcription Factor Family AT4G35270 43.030 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod08g0016 PB1 2.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0016 - - aip:107633985 992.645