Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0010 ATGATGCAGTTTGCATATCATGGTCGTGGGTTCTGGATGAATCTGCTATGCGTTTCGTTAACATTGATTCTATTGAATGGACATGGAACATCCACAGAAGGAACTTCCAGACCTGATGTAGTTAAAATCGGTGCGATTTTCACATTAAAAACTATAAACGGACGAGTTTCTAAAATTGCCATCGAAGAAGCTGTGAGAGATGTAAATGCCGATCCTCGCATCCTGGGTGGACGTAAATTGTCCATCACCATCCATGATTCCAACTTCAGCAGTTTTCTTGGCTTCATTGGGGCCCTCGAGTTCCTAGTGACTGACACTGTAGCTATAATTGGGCCACAAAATTCAGTAATGGCCCCGGTGCTCTCGCATCTTGCAAATGAGCTCCATGTTCCTCTACTGTCCTTCACGGCTCTGGATCCCACCCTATCACCGCTCCAGTACCCTTATTTTGTTCAAACTGCACCCAGTGATCGGTTCCAGATGACTGCGGTGGCGGACATAATTAGTTATTATGGTTGGAGAGAGGTCATTGCAGTATTTAGCGATGACGATCAGAGTCGAAATGGTATAACTTTCTTAGGGGATAAACTTGCAGAGAGACGCTGTAAATTATCTTACAAAGCAGCACTGCCCCCTGATCCAAAAGCCACCCCAAGTGATGTTAGTGGTGAGTTGGTGAAGCTTCGAAGTATGGAAGCTCGAGTAATTGTTGTACACACCTTTGCCCAAACAGGCCTCTTGGTTTTTGATGTGGCTCAAAAACTCGGGATGATGAGCAAAGGGTTTGTCTGGATAGCTACTGCTTGGCTTTCAACTGTTTTAGATTCAACCTCCTCACTATCTTCAAATACCACTTCTAACTCAGTCCAAGGAGTTCTCACACTTCGCCCTCACACCCCTCAATCAAGAAAAAAACAGGCATTTATCTCAAGGTGGAACCGGATAAGTAATGGGTCCATTGGGTTAAATCCATATGGACTCTATGCTTATGATGCTGTTTGGATGATTGCTCAGGCATTAAAGGTATTTTTTGATCAGAATGGTACCATTTCATTCTCTAATAATACTAATTTAAGTGGCGTGAAGGGAGAGATGAGTCTTGGTGCTTTGGGCGTTTTTGATGGAGGGAAACAGTTGCTTGATAGCATATTGCGCCTTAATATGACTGGATTGACAGGATCCATTCAATTTGGCTCAGACAGGTCCCCTTTACATCCATCATATGACATCCTCAATGTAATTGCTACCGGTTATAGGACTGTAGGATACTGGTCTAATTATTCTGGGCTCTCAGTAATTTCTCCCGAGAGACTCTACAGAAAGCCTGCCAATCGTTCAGTTTCAAATCAGCATCTATACAATGTCACATGGCCTGGAAATACCAGAGAAAGGCCTCGTGGATGGGTGTTCCCGGATAATGGAAGGCAACTGAGAATTGGAGTCCCCAACAGAGCTAGTTACCGGGACATTGTCTCACAAATAAATGGCACCAACGTAGTTCAAGGATATTGCATAGATATATTCTTGGCTGCCATAAAACATCTTCCCTATGCAGTTCAATATAGGTTCATTCTGTTTGGAGATGGGCAAAAGAACCCAAGCTACTATGAACTTGTCAATATGATTGCTTCCGATGTTTTTGATGCTGCTGTAGGCGATATTGCAATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGGCTGGTTGTGGTTGCCCCAGTTAAAAAGTTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCATTTACTCCACTTATGTGGGGAGTCACTGCACTTTTTTTCCTCCTTGTTGGAGCAGTGGTCTGGATTCTTGAGCATCGAACAAATGATGAGTTTCGAGGGCCTCCAAAGAAACAGATTGTCACAGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTCGCGCACAGAGAAAACACAGAATTGACACCTTGA 1971 0.4348 MMQFAYHGRGFWMNLLCVSLTLILLNGHGTSTEGTSRPDVVKIGAIFTLKTINGRVSKIAIEEAVRDVNADPRILGGRKLSITIHDSNFSSFLGFIGALEFLVTDTVAIIGPQNSVMAPVLSHLANELHVPLLSFTALDPTLSPLQYPYFVQTAPSDRFQMTAVADIISYYGWREVIAVFSDDDQSRNGITFLGDKLAERRCKLSYKAALPPDPKATPSDVSGELVKLRSMEARVIVVHTFAQTGLLVFDVAQKLGMMSKGFVWIATAWLSTVLDSTSSLSSNTTSNSVQGVLTLRPHTPQSRKKQAFISRWNRISNGSIGLNPYGLYAYDAVWMIAQALKVFFDQNGTISFSNNTNLSGVKGEMSLGALGVFDGGKQLLDSILRLNMTGLTGSIQFGSDRSPLHPSYDILNVIATGYRTVGYWSNYSGLSVISPERLYRKPANRSVSNQHLYNVTWPGNTRERPRGWVFPDNGRQLRIGVPNRASYRDIVSQINGTNVVQGYCIDIFLAAIKHLPYAVQYRFILFGDGQKNPSYYELVNMIASDVFDAAVGDIAIVTDRTKIVDFTQPFIESGLVVVAPVKKLKSSAWAFLRPFTPLMWGVTALFFLLVGAVVWILEHRTNDEFRGPPKKQIVTVLWFSFSTMFFAHRENTELTP* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0010 656 SUPERFAMILY Periplasmic binding protein-like II 455 602 - -
Dod08g0010 656 Pfam Receptor family ligand binding region 59 413 IPR001828 -
Dod08g0010 656 Gene3D - 59 405 - -
Dod08g0010 656 Gene3D - 466 587 - -
Dod08g0010 656 Gene3D - 588 655 - -
Dod08g0010 656 PANTHER GLUTAMATE RECEPTOR 3.6 29 652 - -
Dod08g0010 656 Pfam Ligand-gated ion channel 599 652 IPR001320 GO:0015276|GO:0016020
Dod08g0010 656 Gene3D - 156 430 - -
Dod08g0010 656 SMART GluR_14 478 656 IPR001320 GO:0015276|GO:0016020
Dod08g0010 656 CDD PBP1_GABAb_receptor_plant 42 432 IPR044440 -
Dod08g0010 656 Pfam Ligated ion channel L-glutamate- and glycine-binding site 493 579 IPR019594 GO:0004970|GO:0016020
Dod08g0010 656 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 652 - -
Dod08g0010 656 SUPERFAMILY Periplasmic binding protein-like I 36 469 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0010 Dod-Chr8 222434 227390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0010 11 652 Ion Channels AT4G35290 62.693 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0010 K05387 - gmx:100793969 1070.46