Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0002 ATGGATAACGAGGTGTTGGAATTCGATATTGGGCTGGGAGGAGGAGAGGGAGAATGTGAGGATGATGAGGGGGACATTGAACACCCTATGGCTATGGATGAGGTGGAACTGGCTGAGGCTGACGGACCCACTGGTGGTGGTGTTGGCGAAATATACATTCCTGCTGCGGGTGCGGGTGATCTCTTAGATCTTGAACCTTACGAGGGCATGGAATTCGAGTCCGAGGAGGCTGCCAAGGCCTTCTATAATTCCTATGCTCGTCGTGTTGGGTTCAGTACTCGGGTTAGCTCATCCCGTCGTTCGAGGCGCGACGGAGCTATCATACAGAGGCAATTTGTCTGTGCAAAGGAGGGGTTCCGCAACTTGAATGAGAAACGCACCAAGGATAGAGAGATCAAGCGCCCTCGAACCATTACCAGAGTGGGATGCAAAGCCTCTTTGTCTGTCAAAACGCAAGACTCTGGCAAGTGGGTCGTCTCTGGCTTTGTCAGGGAACACAATCACGAATTGGTTCCCCCAGATCAGGTGCACTGCCTCCGCTCTCACAGACAAATATCAGGAGCCGCTAAGACGCTTATTGATACTTTGCAGGCTGCTGGAATGGGACCTCGGAGAATTATGTCAGCGCTCATCAAAGAGTATGGTGGGATTAGCAAAGTCGGGTTTACAGAGGTTGACTGTCGGAATTACATGAGGAATAATCGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTGTGGATTATTTGAGACAAATGCATGCCGAAAACCCTAATTTCTTCTATGCCATGCAAGGTGGCGAGGATCAGTCCATGAGCAATGTTTTCTGGGCTGATCCCAAGGCAAGGATGAATTATACATTTTTTGGTGATACTGTAACTTTTGACACTACATATCGATCCAATAGGTATCGTTTGCCCTTTGCTCCCTTTACTGGTGTAAATCATCATGGACAACCTGTTCTCTTCGGTTGTGCTTTCCTAATAAATGAATCTGAAGGATCATTTGTGTGGCTTTTTAAGACATGGCTTATGGCTATGTCCGGACGCCCTCCAGTATCAATAACAACCGACCATGATTCTGTAATTCGGTCAGCCATACTGCAAGTGTTCCCTGGGACCCGCCATCGTTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAGTTATCTCACATTTTCCTCAAACATCCAAATTTCGAAGCTGAGTTTCACAAATGCGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAGCGCTAGTTGATAGATATGATCTAAGGGACCATGAATGGCTTCAAGCAATATATTCTGCTTGTAAGCAGTGGGTGCCTGTATATTTGCGGGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATGGCATGAACTCATACTTTGATGGGTATGTAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTGTATGAGAAAGCACTGGAAAGTCGCAATGAGAAAGAAGTGAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAAGACACCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACCAGAAAACTTTTCATGAGGTTCCAAGAGGAGTTAGTTGGGACACTAACATTCATGGCATCCAGAACTGAGGATGATGGGGAGGTCATTACATATCATGTAGCAAAATTTGGAGAGGACCATACAGCATACTATGTTAAATTCAATGTTCTGGAGATGAAAGCGACTTGTAGTTGCCAAATGTTTGAATTTTCAGGCCTTCTTTGTAGACATGTTTTGGCAGTCTTTAGGGTAACCAATGTGCTTACTCTACCATCTCATTATATATTGAAACGTTGGACGAAAAATGCCAAGAGCAATGTTACATTAGAAGAACATTCTTGTGACATATATACTTACTATTTGGAATCTCATACAGTTAGATATAATACCCTCAGACATGAGGCTTTTAAGTTTGTTGATGAAGGAGCAAAGTCTCCTGAAACTTATGATGTTGCGATGGGTGCTTTACAAGAAGCTGCTAAAAGGGTTGCTCAGGCAATGCAGAATGAGGGAAGAATTACCTTCAGCAATGGCAAAGTTAGGAATCACTTGCTGAATGATGTAAGTCGTGCTAATTACAGAAGGGGATGCCAAGAAAAAATCTTGGGCCAGCATATGTCTGAGGATGATATGGACAAGAATATTAGAGAACTTATGAATGAGCTTGAGTATGCAAATCGGAAGTGTGAAATTTACCGGTCCAACCTGCTCTCACTTTTGAAAGCTGTTGAGGATCATAAGTCAGAGTTGTCAATTAAGGTGGAAAACATCAAGATAAGCATTAAAGATGGCCTCTAA 2367 0.4351 MDNEVLEFDIGLGGGEGECEDDEGDIEHPMAMDEVELAEADGPTGGGVGEIYIPAAGAGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKTQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVVDYLRQMHAENPNFFYAMQGGEDQSMSNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEGSFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAILQVFPGTRHRFCKWHIFKKCQEKLSHIFLKHPNFEAEFHKCVNLTESIEEFESCWSALVDRYDLRDHEWLQAIYSACKQWVPVYLRDTFFAEMSITQRSDGMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMASRTEDDGEVITYHVAKFGEDHTAYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTKNAKSNVTLEEHSCDIYTYYLESHTVRYNTLRHEAFKFVDEGAKSPETYDVAMGALQEAAKRVAQAMQNEGRITFSNGKVRNHLLNDVSRANYRRGCQEKILGQHMSEDDMDKNIRELMNELEYANRKCEIYRSNLLSLLKAVEDHKSELSIKVENIKISIKDGL* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0002 788 Pfam SWIM zinc finger 561 607 IPR007527 GO:0008270
Dod08g0002 788 SMART 26again6 584 611 IPR006564 GO:0008270
Dod08g0002 788 Pfam MULE transposase domain 293 386 IPR018289 -
Dod08g0002 788 ProSiteProfiles Zinc finger SWIM-type profile. 573 609 IPR007527 GO:0008270
Dod08g0002 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 755 IPR031052 GO:0006355
Dod08g0002 788 Coils Coil 731 758 - -
Dod08g0002 788 Pfam FAR1 DNA-binding domain 81 172 IPR004330 -
Dod08g0002 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 48 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0002 Dod-Chr8 43494 48575 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Dod08g0002 MULE 7.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0002 - - adu:107496170 1417.52