Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2251 ATGGATCAAGATGCTCGCAAAATACATGTATCGAGGTTTAGGGCAAGAAAAACAATGTTGTTGATTGTGACGGATATTGCAGCTCGTGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTCCCTCCTAAGCCGAAAATATTTGTTCATCGAGTCGGAAGGGCAGCAAGGGCTGGTCGTACTGGTACTGCATATTCGTTTGTGACTTCAGAGGATATGGCTTACCTTTTGGATCTTCATTTATTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGAATATGGATGGAGTAATGTCAAAAGTTGACCAGGCTATGGCAAATGGAGAAACCATTTATGGTCGTTTACCTCAAAAGGTCATTGACCTTGTATCAGACAGAGTTAGGGAAATTATTGATACTTCTTCAGAACTTGAATCATTGCAGAGATCCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCCTCAAAGGAATCCATTAGAAGAGTAAAGGATTTACCCCGTGAGGGTCTGCATCCGATTTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTTGCATTTTCAGAGCATTTGAAAAAGTTTAGGCCAAGGCAGACCATCTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATTTGCAGGGCCCTTCTGACCAATGGCTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAACTTGGTTCATGAACAACATTCTGAGAGTAAAAAGGAAAAGGAGGAAATTCAATTGGAAATTACTCCTTCCATGGAGAAAGGGAGAAAAGCAGCATGTGCTTCTAAGAGAAAGCCTCAATGTTTCAGGGATGAGGATTACTATATAAGTTCAATACCTAAAAATCTACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGAATTTGCTTCAAATAGATTGGAAGCTGCTGTCCTAGATCTGGTTGCGGATGATAGTGCTGGCATTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGCAAAAAATACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGGAAGATAAAGACAGAAAGTGGTGCAAAAATGAAGGCTACCAAGACTGGCATATATAAGAAGTGGAAAGAACGTTCACACAGTAAGGTATCTCTTAAGGGGACAAGTAATGAGGGTGATGCTCAAGAATCCACGAGTTTGACAGGATCTTACAGAGGAGGTCGTAGAAATTTTAAAGGCAGTAAGAAGCAGCAATCGATGCCCAATTCTCATGTGCGATCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAAAAAGCCAACAGAATTTCATATGTAAAGAGCAAGTCGCAAAAGGGTAAAAAATTCGGTAAAAATGGGGGGAAAAAAAGAAATGTTAAATAG 1455 0.3952 MDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQNMDGVMSKVDQAMANGETIYGRLPQKVIDLVSDRVREIIDTSSELESLQRSCKNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSEHLKKFRPRQTILEAEGEAAKSKHLQGPSDQWLDVMKRKRAIHENIINLVHEQHSESKKEKEEIQLEITPSMEKGRKAACASKRKPQCFRDEDYYISSIPKNLHMEAGLSVKANEEFASNRLEAAVLDLVADDSAGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKMKATKTGIYKKWKERSHSKVSLKGTSNEGDAQESTSLTGSYRGGRRNFKGSKKQQSMPNSHVRSEIKDMDQIRKERQKKANRISYVKSKSQKGKKFGKNGGKKRNVK* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2251 484 Gene3D - 1 177 IPR027417 -
Dod07g2251 484 Pfam Helicase conserved C-terminal domain 1 62 IPR001650 -
Dod07g2251 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 105 IPR027417 -
Dod07g2251 484 SMART helicmild6 1 62 IPR001650 -
Dod07g2251 484 Pfam DBP10CT (NUC160) domain 330 391 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Dod07g2251 484 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 1 480 - -
Dod07g2251 484 SMART DBP10CT_2 330 392 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Dod07g2251 484 MobiDBLite consensus disorder prediction 399 419 - -
Dod07g2251 484 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 101 IPR001650 -
Dod07g2251 484 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 480 - -
Dod07g2251 484 CDD SF2_C_DEAD 1 71 - -
Dod07g2251 484 MobiDBLite consensus disorder prediction 390 484 - -
Dod07g2251 484 MobiDBLite consensus disorder prediction 440 459 - -
Dod07g2251 484 MobiDBLite consensus disorder prediction 460 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2251 Dod-Chr7 54335850 54346272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2251 1 95 Eukaryotic Initiation Factors Gene Family AT1G72730 41.053 1.02e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2251 K14808 - gmx:100806274 781.556