Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2218 ATGTTGGAATACGAATGGGGGAACCCATCAACCATAATGCTCACCGGAAACGAAGACGGCGGCGGCGGCGCCCCACCCACCTCCGACCAAGCCCACCGCCAAATCTTCGAGCACTACGCCTCACACGGCTTGCTGCCCGACCACTTCCTGCATGGGCCCGGGCCCACCACAACCACCACCACAAACACAAACACACCCACAAACGCCAACAACAACACCCCCACCATCGACCTCTCTCACCACAGCTTCGGCCCACAAGCCCACCAGCACCACCAACATAACCACCACGTCCACCACACCTTCTTCGACCCACGCGCCTTCCACGGCGCGTCTCCAACCCCCTACCCTCCGCCCCATCCCCCGCCACCTCCCTCCATGCTCTCCCTCGACCCCCTCCCCCATCACGCCCACTGCGGGCCCGGGCCCGGGCTCATGCTCGTACCGAAATCCGAGGATGTTGGCCGGCCCATGGACTTCGTGGGCTCCCGAATTGGGCTGAACCTGGGTGTCCGGACGTACTTCTCGTCGTCAGAGGACAACTTCGTGAACGGGCTCTACCGCCGGTCAAGGCCGGCGGAAGCGGGGTCGGCAGTGGCGTCGTCGAATAATTCGCCGCGGTGCCAGGCGGAGGGGTGCAATGCTGATCTGTCGCAGGCGAAGCACTACCACCGGCGCCACAAAGTGTGCGAGTTCCACTCCAAGGCCTCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTCCATCTTCTTTCTGAGTTTGACAATGGAAAACGTAGCTGCAGGAAGAGACTCGCAGATCATAATCGTCGCAGAAGAAAAACCCAGCAGCCAACTCAAGAGATCCACAAATCTCAGCCTACTAATTTGGATAACGTTGCAAGGTCCCCGCCGGACTCTGGAGCTCAGTCGTCATCGTCGGTGACAGTGGCGGTCTCGCCACCAGATTATTTCCGGCAAAGGCCGTACCAAAGTACAAGCCCATCAACAACTTCAAGCTCACTGTTTTTCTCAAGCGGGTAG 1041 0.6013 MLEYEWGNPSTIMLTGNEDGGGGAPPTSDQAHRQIFEHYASHGLLPDHFLHGPGPTTTTTTNTNTPTNANNNTPTIDLSHHSFGPQAHQHHQHNHHVHHTFFDPRAFHGASPTPYPPPHPPPPPSMLSLDPLPHHAHCGPGPGLMLVPKSEDVGRPMDFVGSRIGLNLGVRTYFSSSEDNFVNGLYRRSRPAEAGSAVASSNNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIHKSQPTNLDNVARSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTSPSTTSSSLFFSSG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2218 346 MobiDBLite consensus disorder prediction 53 82 - -
Dod07g2218 346 Pfam SBP domain 207 280 IPR004333 GO:0003677
Dod07g2218 346 MobiDBLite consensus disorder prediction 110 125 - -
Dod07g2218 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 101 330 - -
Dod07g2218 346 MobiDBLite consensus disorder prediction 286 346 - -
Dod07g2218 346 MobiDBLite consensus disorder prediction 52 97 - -
Dod07g2218 346 MobiDBLite consensus disorder prediction 106 125 - -
Dod07g2218 346 MobiDBLite consensus disorder prediction 273 346 - -
Dod07g2218 346 SUPERFAMILY SBT domain 205 285 IPR036893 GO:0003677|GO:0005634
Dod07g2218 346 Gene3D - 197 268 IPR036893 GO:0003677|GO:0005634
Dod07g2218 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 330 IPR044817 GO:0003677
Dod07g2218 346 ProSiteProfiles Zinc finger SBP-type profile. 204 281 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2218 Dod-Chr7 53911949 53915025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2218 1 254 SBP-box Gene Family AT1G02065 44.322 3.46e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod07g2218 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2218 - - gmx:100778566 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2218 07 53911949 53915025 Dod01g1051 01 20781887 20782819 PCT