Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2181 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGGTTCGGCGGCGGGGCGGTCCCACCGTCCCGTGACGGCGGACATCCTGTGGCCGAACCTGAGGAAGCGGAGCTCCGCCGCCGGCAAGAGGAGGGCCGCCGCTGCCGCCGGCGATGACTTCGAGGCTGATTTCAGGGAGTTTAAGGATGACTCCGACATCGAGGAGTACGATGAAGATGATGATGTTGACGACTTGTTTTCCAAGGGCTTTGGATCATTCTCTTCTTCCAACATCAACAAGCCTCAACACAAAGCTCGTGGAGCTAGAGCTGCGAAATCTGTGGAACCAAGTGGGCAAGCTGAGAAGTCTTCTAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGCCAGCGCCCATGGGGGAAATGGGCGGCTGAGATCCGTGACCCAAGAAAGGGTGTTCGCGTGTGGCTTGGAACATTCAGTACCGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCCAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGGCTCCGGCCACTCCCGCAAAACGCTTTAAGGCACCTCGTCGAGAGGAGCAGCTGCCAAAGGAAAAGCTTAACTCTGTTAAGTCCAAAGTGAACAACCAGATGTTCAACGTTGGTGACAATCTGGGGGACTACTACTGTCCTTTGGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGCTAACATGGGGTCCTTCCCTGGAAATGGACTCGGGCTCACACCCTTGACTGCATCTGATGATGTGACTGCATATTTCAGTTCAGAGCACTCGAGCAATTCATTTGATGTTGATCATTATTCTGATCTTTCGTGGGGCGAGCAGGGACCGAAGACTCCTGACATCTCATCCATGCTTTCAGCTCCTCTGGAAGGTGAATCTCAAGTTGTGGAGGGTGCTAATCAGGACAAGAACCTGCAGCAGCCTAACTCTCAGGGCGTGGTATCCATGCAAGATGGTTCCGGAAAGACACTGTCTGAGGAGCTCGCAGATATGGAATCACAGCTGAAGTTCTTTGACACCCCTTTTCTTGATGGGAGTTGGAATGCTGTTTCAGTGGATGCCTTTCTTGGCATAGACTCAACTCAGGATGTAGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATGGGAGGTGGAGTTTTCTAA 1206 0.5191 MCGGAIISDFIPAGSAAGRSHRPVTADILWPNLRKRSSAAGKRRAAAAAGDDFEADFREFKDDSDIEEYDEDDDVDDLFSKGFGSFSSSNINKPQHKARGARAAKSVEPSGQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEAPATPAKRFKAPRREEQLPKEKLNSVKSKVNNQMFNVGDNLGDYYCPLDQVEQKPLVNQYANMGSFPGNGLGLTPLTASDDVTAYFSSEHSSNSFDVDHYSDLSWGEQGPKTPDISSMLSAPLEGESQVVEGANQDKNLQQPNSQGVVSMQDGSGKTLSEELADMESQLKFFDTPFLDGSWNAVSVDAFLGIDSTQDVGNPMNLWSFDDLPSMGGGVF* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2181 401 MobiDBLite consensus disorder prediction 189 204 - -
Dod07g2181 401 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Dod07g2181 401 PANTHER DNA-BINDING DOMAIN 1 395 IPR044808 GO:0003700|GO:0009873
Dod07g2181 401 MobiDBLite consensus disorder prediction 86 128 - -
Dod07g2181 401 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Dod07g2181 401 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Dod07g2181 401 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Dod07g2181 401 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Dod07g2181 401 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Dod07g2181 401 MobiDBLite consensus disorder prediction 180 204 - -
Dod07g2181 401 PANTHER EREBP TRANSCRIPTION FACTOR 1 395 - -
Dod07g2181 401 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Dod07g2181 401 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2181 Dod-Chr7 53224509 53228068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2181 1 401 AP2-EREBP Transcription Factor Family AT3G14230 42.417 6.04e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod07g2181 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2181 K09286 - gmx:100818646 446.432