Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2176 ATGATGTTTCAGTTTCATAGTCAAGGAGCTCAGAGACAGAGTTGTACTTTGCTTGCTGTTACATGTGGCACTGGTTTTGAGCAGAAGAAGCCAGCACCACAAGAGGATAATCAGCTCAATTACCCTTTCCCTGAGCTGGTTTCTGCAGGGCGTCTTGAGGTTCAAGTTCTGAGCAATCCTGAGAAGGAGCAGTTTCAGAAAGTTCTGGAGTTGTATCAACCAAATATCGTTTACTTACAAGGAGAATGGCAAGCTGATGGTGAAGTTGGTTCACTGGTTTGGCAGGGTGTGGAATTATCCACCCCCGATGATATAACAGAGCTCTTTGGTCCAACATTGCCCACTGCTGTTTATTTAGAAATCCCAAATGGAGAAAGCTACGCAGAGGCTCTTCAAGAGAAGGGAATCCCATATGTGATATTTTGGAAGAATGCCTTTTCCTGTTATGCTGCCTGCCATTTTTGTCAAGCTTTTCTTTCAGTGGTGCAGAGTTCATCTACACATACATGGGATGCTTTCCATCTTGCACGTGCGTCTTTTGAGTTTTACTGTGTTCAAAACAACCAAATACTTCCTGCTGACAACCATGATGCTGATAGTGAGATGGGGCCACACCTTCTGGGAGACTGTCTCAAAATCAATGTCGATCCTCCAGAGATTGCTGAAGAAGAAGATGATGATGAAAGTTCCTTAGGCGGTCTTCCTGCTATAAAGATACATGATGATGAAGTTAACTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGACGAGTCATTGCTAAGATCTTTGGAGGATGGACTCAGTGCTCTTTTAACTATAGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCGCCCCCACCACCTCTTCAGGCAGCTGCTTTTTCTCGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCTCTTTTGGTATCAGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTAGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGGCAACTAGTTCGTGCGCACCTAAGCAATGAGGGGAACAGACAGAATGTCTCTGAACCTCGCAGATCTGCTTCAATTGCTTGTGGAGCAACGGTATTTGAAGTTTGCATGAAACTTCCTCATTGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAGAGATGATGCTGAGCGCTTACTTTTCTTCTATCGAAACTGTGACAAAGATAGCTTTACAAACAATATAATTTTCAGCACTCCCCCTGGTTGGTTGAAACCACCCCCTCCTTCTAGAAAGAGGTGTGAGCTAAGCCAAGAGGCTAGTCCTGGCCTTCATGATGGTGTTTATTCAGAGAAGGGTGCTGTTCGAAAAGTAGATGAAGAAGAAAGGGACGGAAAAATGGCAAATGGGATTAGCACGCCTTTAACTCCAGCTAGGCAGAGGTTAAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAAATGGTTTTGATGGTGCCCAAGTTGAGGCTAATTTACCGCTTGTTGCCCCACCCAAACGAAGTAGCATTGGGTCAACTTCTGCAACACAGCGAAAATCATTTTCAAGCTCAGCTCAGTCTAAGCAGATTATTTCACTGAACCCATTGCCTTTGAAGAAACATGGCTGTGGCAGGGGCCCAGTGCAAACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTTTGATACTCCGGGGACATACTCGATTGATTCCTCAAGGAGGGCTTACTGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTGTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTCTCGAAGATGCGCAATTACACAGCCACCAACAGAATGACTGGAGTCGGAAATACACTTAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGCTGCCTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGCATTTGTGGTGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTGGGCGCATTCAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCCTTGTAGTGTTACAAATTTCAAGAAGAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCATTGTCATCACGACCCCTTTAA 2358 0.4402 MMFQFHSQGAQRQSCTLLAVTCGTGFEQKKPAPQEDNQLNYPFPELVSAGRLEVQVLSNPEKEQFQKVLELYQPNIVYLQGEWQADGEVGSLVWQGVELSTPDDITELFGPTLPTAVYLEIPNGESYAEALQEKGIPYVIFWKNAFSCYAACHFCQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQILPADNHDADSEMGPHLLGDCLKINVDPPEIAEEEDDDESSLGGLPAIKIHDDEVNLRFLICGAPSTVDESLLRSLEDGLSALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKRQLVRAHLSNEGNRQNVSEPRRSASIACGATVFEVCMKLPHWALQILRQLAPDVSYRSLVALGIASIQGLPIASFERDDAERLLFFYRNCDKDSFTNNIIFSTPPGWLKPPPPSRKRCELSQEASPGLHDGVYSEKGAVRKVDEEERDGKMANGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFCGPSETNGFDGAQVEANLPLVAPPKRSSIGSTSATQRKSFSSSAQSKQIISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHTRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTATNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPPCSVTNFKKKQSVANGYSQGSLSSRPL* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2176 785 Gene3D - 597 702 IPR036431 GO:0003677
Dod07g2176 785 CDD ARID 601 699 - -
Dod07g2176 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 766 IPR013083 -
Dod07g2176 785 SUPERFAMILY FYVE/PHD zinc finger 695 763 IPR011011 -
Dod07g2176 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 775 - -
Dod07g2176 785 MobiDBLite consensus disorder prediction 556 577 - -
Dod07g2176 785 MobiDBLite consensus disorder prediction 479 496 - -
Dod07g2176 785 SUPERFAMILY ARID-like 599 714 IPR036431 GO:0003677
Dod07g2176 785 SMART bright_3 600 704 IPR001606 GO:0003677
Dod07g2176 785 Pfam ARID/BRIGHT DNA binding domain 602 699 IPR001606 GO:0003677
Dod07g2176 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 775 IPR042293 -
Dod07g2176 785 ProSiteProfiles ARID domain profile. 599 703 IPR001606 GO:0003677
Dod07g2176 785 MobiDBLite consensus disorder prediction 552 577 - -
Dod07g2176 785 MobiDBLite consensus disorder prediction 456 502 - -
Dod07g2176 785 CDD PHD_ARID4_like 709 760 - -
Dod07g2176 785 SMART ARID_2 596 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2176 Dod-Chr7 53166788 53174857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2176 5 774 ARID Transcription Factor Family AT3G43240 60.336 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod07g2176 ARID 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2176 - - gmx:100816540 1378.23