Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2164 ATGGGTGGTTCAAGTAACATATTGGATGAGCCACGTGTAGTTGAGATAACGGGAAAGATCATGGTTGCAGCTGTGATACTCCTCTTCATGGTGTCTGCGTTTGTTCTCGTGCTCCACCTCTATACCAAGTGCTTCTTGTGGCGTGTTGATGAAGAAACCATCACTTTTCAGCCACGTGTCCACCGCCGCCACCCCCGCCGCCGTCGCCGCTTTGTCTTCGCCCCCGGCCAAGACCCTATCATCTATGGCAGTGATCACTACCAAGTTGGTCTTGACCCTTCAGTCCTTAGGTCCTTACCAGTGTTGGTGTTCCAACCACATGAATTCAAAGATGGTTTGGAATGTGCTGTTTGCCTCTCAGAGCTTGTTCAAGGTGAGAAGGCAAGGATTTTGCCCAAATGCAATCATGGGTTTCATGTAGATTGCATAGACATGTGGTTCCAATCACATTCTACTTGTCCCCTATGTAGGACAATAGTTACTACCTATGAACCCTCTAAACCAAGTAGTAGTTCAAGTGCTGAAGACAGTGCTTTAGTGAATAGTGAGCCATCACAAGCAGAGAATTCAGATGATATGAGTGGCTTGGAGTCTTCAAATTTTCCCACACATGTGCTGGTTTGGGGTGACCAGACACAGTTTAGTTCCGTTGGTGTTCCCTTGGAGGAGGACATTTCTTCTGAAGAGCCACCTTGCCTCTCATCATCTATTTCAAATTCCTCAGCCAATGATGGTGGCATTGATAGCACTACCAGTGATAGCAGATGCAATGGAATGTTGGTGATTGATATACCGAGTGATGAGTTCACTTCTTCCTCTTTGTCACTTTCTGCCAGCAGTAGGTGTCCTGAAGATGAGATGAAATCACCTATGGCAGCAAAATTGAGGTCATTGACAAGGCTTTTGAGTAAGGACAAGAAGTCAAGTCCTTTTAGTCCCAATTCTGTTGATGTGGAACAAGCAAATAGCAAGGAATTTGATGATGGCGTTCATTGA 996 0.4568 MGGSSNILDEPRVVEITGKIMVAAVILLFMVSAFVLVLHLYTKCFLWRVDEETITFQPRVHRRHPRRRRRFVFAPGQDPIIYGSDHYQVGLDPSVLRSLPVLVFQPHEFKDGLECAVCLSELVQGEKARILPKCNHGFHVDCIDMWFQSHSTCPLCRTIVTTYEPSKPSSSSSAEDSALVNSEPSQAENSDDMSGLESSNFPTHVLVWGDQTQFSSVGVPLEEDISSEEPPCLSSSISNSSANDGGIDSTTSDSRCNGMLVIDIPSDEFTSSSLSLSASSRCPEDEMKSPMAAKLRSLTRLLSKDKKSSPFSPNSVDVEQANSKEFDDGVH* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2164 331 Pfam Ring finger domain 114 157 IPR001841 -
Dod07g2164 331 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 319 IPR044675 -
Dod07g2164 331 MobiDBLite consensus disorder prediction 304 331 - -
Dod07g2164 331 MobiDBLite consensus disorder prediction 166 196 - -
Dod07g2164 331 CDD RING-H2_EL5_like 114 157 - -
Dod07g2164 331 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Dod07g2164 331 SMART ring_2 115 156 IPR001841 -
Dod07g2164 331 SUPERFAMILY RING/U-box 95 164 - -
Dod07g2164 331 MobiDBLite consensus disorder prediction 229 256 - -
Dod07g2164 331 MobiDBLite consensus disorder prediction 220 256 - -
Dod07g2164 331 PANTHER RING-H2 FINGER PROTEIN ATL3 5 319 - -
Dod07g2164 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 162 IPR013083 -
Dod07g2164 331 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2164 Dod-Chr7 53048662 53049663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2164 15 309 C3H Transcription Factor Family AT1G53820 41.290 2.75e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2164 - - gmx:100775523 346.665