Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2163 ATGACCAACATCCTCATCTTCCTCACAGCCATTGCTTTTGTGGCTCACTCATTCCAAAAGCACATGATCCAATTCCAAAGGCTGCACCAACTTTACAAGCAATATAGATATGCTAACAAGGAGGCAGAACATGGTGAAAGTGAGTATTGTTCAGTGTGCCTAAGCCAATTGTGCAAAGGGGAAAAGGTTAGGACCCTTCCAGTGTGCAACCACAGGTACCATGCTGATTGTATTGGTGCATGGCTGAAGAACCACACCACATGCCCTCTTTGCAGGAACAAGATCATTGACCATGTCCCAAACAGCCAGCACAAATACCTGCAGGTGAAGCAATTTAGGGAATCTATGATTGATGTCTTGCAAGGTTTCTCTGATGTGTTGGTAGGTGTTATGTACATGATGCTTCCAAATAGCATCAGGGAGACTTTCCCCTTGGTTCATTGA 444 0.4459 MTNILIFLTAIAFVAHSFQKHMIQFQRLHQLYKQYRYANKEAEHGESEYCSVCLSQLCKGEKVRTLPVCNHRYHADCIGAWLKNHTTCPLCRNKIIDHVPNSQHKYLQVKQFRESMIDVLQGFSDVLVGVMYMMLPNSIRETFPLVH* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2163 147 SMART ring_2 50 91 IPR001841 -
Dod07g2163 147 Pfam Ring finger domain 49 92 IPR001841 -
Dod07g2163 147 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Dod07g2163 147 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 99 IPR044675 -
Dod07g2163 147 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 28 99 - -
Dod07g2163 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 97 IPR013083 -
Dod07g2163 147 CDD RING-H2_PA-TM-RING 50 92 - -
Dod07g2163 147 SUPERFAMILY RING/U-box 31 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2163 Dod-Chr7 53038984 53039709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2163 50 95 C3H Transcription Factor Family AT1G53820 58.696 4.70e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2163 - - gmx:100500375 197.978