Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2157 ATGGCAATTGAACACGAAGATGATCTCAAGGACGAGAAGAACCCCCGACCCCTCGACGAAGATGACATCGCCCTCCTCAAAACCTATGGTTTGGGACCATATTCCACAAGTATTAAAAAAGTTGAGAAGGAAATCAAAGACATGGCAAAGAAAGTGAATGACTTATGCGGTATCAAGGAATCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACGAAGATTATAAATCCAAACTCTGAAGATGCCAAATATGTTATCAATGTGAAACAGATTGCAAAGTTTGTTGTTGGGCTAGGTGACAAAGTTTCTCCCACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAGTATCAAATTCAGATTCCTCTGCCGCCAAAAATTGATCCAAGTGTTACCATGATGACTGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTCGTTGAACTTCCCATGCTCCATCCAGAGAAATTTGTCAAGCTTGGAATAGATCCTCCAAAGGGTGTTCTTTGTTATGGCCCCCCAGGAACTGGAAAAACACTTCTGGCCAGGGCTGTGGCTAATAGGACGGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTCGGATGGTTCGTGAGCTATTTCAGATGGCTCGTTCAAAGAAGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCAATTGGAGGTGCGAGATTTGATGATGGTGTTGGTGGCGACAATGAGGTTCAACGCACAATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTTCTGATGGCAACCAACAGGCCTGACACTCTAGATCCAGCACTACTAAGGCCTGGGCGATTGGATCGTAAAGTTGAATTCGGCCTTCCTGACTTGGAGAGTAGGACACAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGGTTTGAACTTTTAGCTCGACTTTGCCCGAATTCCACCGGAGCTGATATAAGGAGTGTATGCACTGAAGCCTGGTATGTACTGCAATCCGTGCCAGAAGGAAGACTGTAA 1194 0.4439 MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAWYVLQSVPEGRL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2157 397 SMART AAA_5 201 340 IPR003593 -
Dod07g2157 397 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 98 387 IPR005937 GO:0005737|GO:0030163|GO:0036402
Dod07g2157 397 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Dod07g2157 397 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Dod07g2157 397 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 5 386 - -
Dod07g2157 397 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 5 386 - -
Dod07g2157 397 Gene3D - 158 337 IPR027417 -
Dod07g2157 397 Gene3D - 32 157 IPR012340 -
Dod07g2157 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 387 IPR027417 -
Dod07g2157 397 Gene3D - 339 391 - -
Dod07g2157 397 CDD AAA 171 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2157 Dod-Chr7 52984505 52988323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2157 168 388 Calmodulin-binding Proteins AT3G56690 37.387 1.37e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2157 K03061 - gmx:100779787 772.696