Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2141 ATGGTGGAATGTAGAGTGCCAGTTGGATACAGATTCCATCCCACAGATGAAGAGCTTGTGAGTCACTACCTCAACCTCAAGTTACTTGGTCATCATTCCACTGTCATTGCAGAAGTTGATGTTTGCAAGTTTGAGCCTTGGGACTTACCAGCATTTTCCAAGGTGAAATCGGATGACCCGGAATGGTTTTTCTTCAGTCCAGTTGGTTTGAAGTACAGAAACAGCAGCAGGTGTAACAGAGCAACTGATGCTGGCTACTGGAAGACCACTGGCAAAGAGCGTAAGATCAAGACTCGAGGCACCAACAATGTCATTGGCACCAAGAAGACACTGGTTTTCTACAAGGGTCGTGTTCCACAGGGTGTCAAGACCAGTTGGGTTATCCACGAATATCATGCTGTTACCTTTCCTGATGACAAGAGAAATTTTGTCTTGTGTCGCTTAATGGAGAAATCTGAGAAAAAAGCTGAAGGGGGGACTGCAGCATTGATACACGATGAAGAGGAGCCAAGTAACCATATTGCTACTAACTATGAAAGCCAAGCAATAACAGCACATAGAAGAATTCCGGATGCATATACTTCGCCGGAAGTGAATCTTGAATCAGTCTATCTACCACAACTTCAGGTAGAGGACTATGACATCCCCTCACTACAACAATCTCCAGTTGCCATTGAACAGGAACCATGTTTCCAAGGTTCCACATCTCCAAATGCCCTTTTTGGCAACGAAAACGGCATTATGCAGTTTCCATTTGAAACTATGCAGGGGGAAGATGATGTTGATTTGTTCTTGAATTCAATTTTAGCCGGTGAGGATGTTTTTACCGATGAAGAGGCAGCACATGCTTTCATCAATGAGTCCACCCCTTCACAGAATTTGGGAGAGCTGTATTATGAAAGCAGTGAAAAAGATGCTGAACTACTCCCGCCACAGCATGGCCATATTCTGGACACTACATCAACACTGTGCAATGATCCTACTGTTTCAAGGGAAAACCAATTGATATCAGTGGTTAGATCATCACATGATGCTGTCTATGATGGCCATCCTGCACTGTCCGCCAGTTATGATTTCCGGGGCGCTGACGATTCTGTTGACTCGACTGCAAAATCTCTGTCTATTTTCCTCATTGAGAATGCTAGCTACCCTTCAAGCCAAGCAGTATCCCAACAAGAGGATCTCAGACTTAGTGAACTTCAGGGCCCGTCACAACAGGTGCTGAAGGAAAGCACAATCAATCATTCAACTGGCATCACTGAAAAGGGTTTTTTTCATCTACACTGGGACTTCTTTGCTGCCAATTTCAGGGTTTCTTTTAACCTGGAATTCTTTGCCTCTTGA 1344 0.4427 MVECRVPVGYRFHPTDEELVSHYLNLKLLGHHSTVIAEVDVCKFEPWDLPAFSKVKSDDPEWFFFSPVGLKYRNSSRCNRATDAGYWKTTGKERKIKTRGTNNVIGTKKTLVFYKGRVPQGVKTSWVIHEYHAVTFPDDKRNFVLCRLMEKSEKKAEGGTAALIHDEEEPSNHIATNYESQAITAHRRIPDAYTSPEVNLESVYLPQLQVEDYDIPSLQQSPVAIEQEPCFQGSTSPNALFGNENGIMQFPFETMQGEDDVDLFLNSILAGEDVFTDEEAAHAFINESTPSQNLGELYYESSEKDAELLPPQHGHILDTTSTLCNDPTVSRENQLISVVRSSHDAVYDGHPALSASYDFRGADDSVDSTAKSLSIFLIENASYPSSQAVSQQEDLRLSELQGPSQQVLKESTINHSTGITEKGFFHLHWDFFAANFRVSFNLEFFAS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2141 447 Gene3D NAC domain 15 156 IPR036093 GO:0003677|GO:0006355
Dod07g2141 447 ProSiteProfiles NAC domain profile. 6 151 IPR003441 GO:0003677|GO:0006355
Dod07g2141 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 406 - -
Dod07g2141 447 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Dod07g2141 447 SUPERFAMILY NAC domain 4 151 IPR036093 GO:0003677|GO:0006355
Dod07g2141 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 6 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2141 Dod-Chr7 52860612 52877773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2141 6 158 NAC Transcription Factor Family AT4G35580 55.625 1.11e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod07g2141 NAM 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2141 - - ccaj:109803958 363.614