Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2139 ATGGAGGTGATGGAAGAAGTTAAAGGGTATTCTGATAGCAGAGAAGAATTGGAAGAAGAGGAGGAAGCAGCAGAAGAAATCATCACAAGGGAGGAAAGCAGCAGCAGCATCAGCAGGTTACACCACCATCAAGATGCAGCCTCCAATTTCATCAACCACACAGCAAGGAAGCAGCTAGACTTCATGGACTTGTCACTCGGGACAAGCCGCCACCACCACCATGAGGCCAACAATTTCCAAGGATCATTAGGCCACCATTATGCCACTACTAGTACTTCTACTACTTCTTCTTCTTCTCATGCCAACAACAACCACCTTAATAATCAGCCTGTTGAGAAGGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTAGGGAAGCTCAACAGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTACTTCCCACTTGACTCCAGTGCAAATGAGAAAGGGCTTCTGCTCAATTTTGAGGACAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCATACTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGTTGGAGCCGTTTTGTTAAGGAGAAGAAGCTTGATGCTGGGGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTATAGGCAGCGGTTGTACATAGATTGGAGGAGGAGGCCAGAACACCATCATCATCCTCATCATCTTCATCATCATCGTCATGGCCCTCTTGATTATCCCTCTTCAACAACACTCATCACACCCTTTTTCCTTCCAAATCAGCAACATTTGTCATCAAATTACTCAATTAGATGCGGTACTGGAAGGTTGTATCCCCTCCCTTCACAACAAGAAGCACCACAAAGGAATCATCACCATGATCAACAACACTTTCAGCATGTCAATTACAATAATATGTACCCTTTTTATCACCACCACCACCAACAACAACAACATGGTGGTGGAAGCTTAAGTCACCACTATGGTTACAATAATGATGTGAATTCATCAGGATCTGGGTCAGTCTATTACCTGAGGTCAACAACACCCTCAATGCCAATGGCTGATACTACTACTACAAGGCAACAACAACAACAAAAGGGAGGGAATAATATTGCCCCCATGATCATTGATTCTGTGCCAGTTGCTCATCATCACCACCACCATGATCATAACCATAATCATAATCACCATGGTGGTAGTGTTAGTGGTAATAGTAGTAATAACAATACTACTAATACTGCAGCAAAAAGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCAACAGCACAAGAAGACTCACAATCTTCATCTTCTTTGCCACCACTTCAACTCTTGGACGAAGAACCACTACTCTCATCATCATCAGCAGCAGCAGCAACAAGGTTTGGAGATCAGAGACGAGGAGCTGCAATGGTTTTTGACTTGGACCCTTCTTTGCAATACCATCATCAGTGA 1452 0.4415 MEVMEEVKGYSDSREELEEEEEAAEEIITREESSSSISRLHHHQDAASNFINHTARKQLDFMDLSLGTSRHHHHEANNFQGSLGHHYATTSTSTTSSSSHANNNHLNNQPVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRQRLYIDWRRRPEHHHHPHHLHHHRHGPLDYPSSTTLITPFFLPNQQHLSSNYSIRCGTGRLYPLPSQQEAPQRNHHHDQQHFQHVNYNNMYPFYHHHHQQQQHGGGSLSHHYGYNNDVNSSGSGSVYYLRSTTPSMPMADTTTTRQQQQQKGGNNIAPMIIDSVPVAHHHHHHDHNHNHNHHGGSVSGNSSNNNTTNTAAKRLRLFGVNMECASSTAQEDSQSSSSLPPLQLLDEEPLLSSSSAAAATRFGDQRRGAAMVFDLDPSLQYHHQ* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2139 483 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 86 445 IPR044800 GO:0003700
Dod07g2139 483 MobiDBLite consensus disorder prediction 1 37 - -
Dod07g2139 483 ProSiteProfiles B3 DNA-binding domain profile. 117 222 IPR003340 GO:0003677
Dod07g2139 483 Gene3D - 111 234 IPR015300 -
Dod07g2139 483 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 86 445 - -
Dod07g2139 483 Coils Coil 7 34 - -
Dod07g2139 483 MobiDBLite consensus disorder prediction 308 327 - -
Dod07g2139 483 MobiDBLite consensus disorder prediction 82 110 - -
Dod07g2139 483 MobiDBLite consensus disorder prediction 393 407 - -
Dod07g2139 483 MobiDBLite consensus disorder prediction 75 111 - -
Dod07g2139 483 SUPERFAMILY DNA-binding pseudobarrel domain 114 205 IPR015300 -
Dod07g2139 483 SMART B3_2 117 222 IPR003340 GO:0003677
Dod07g2139 483 Pfam B3 DNA binding domain 117 221 IPR003340 GO:0003677
Dod07g2139 483 CDD B3_DNA 115 204 IPR003340 GO:0003677
Dod07g2139 483 MobiDBLite consensus disorder prediction 336 362 - -
Dod07g2139 483 MobiDBLite consensus disorder prediction 379 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2139 Dod-Chr7 52803910 52806300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2139 111 426 RAV Transcription Factor Family AT2G46870 43.558 4.48e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod07g2139 B3 1.6e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2139 - - gsj:114390989 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2139 07 52803910 52806300 Dod07g2139 07 52803910 52806300 ECH