Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2129 ATGGAGAGGCTTCAAGGACCCCTCAGTTCATGTTTCTTTGGTGACCATTTGGAAGTGAATTGTTTGGAGCAAGGTTTTGTGGATGCAGAAAGCTTGAGATTTGAGGAGGAAAGGCAATTTTTGATATCTAGCTTAGAGGATAACATGCCATTCCTTCAGATGCTTCAGAGTGTGGAATATTCCCCACAGTGCTTCTTCCCTTTGAACGAGCCAAGCTTTCAAACTCTTCTGAGGCTGCAACACATGAAGAACAATAATAATAACAACAAACCATGGGAAAGTGTAGCCTACATTCCACAAATGGAGAACAAGAACCATAATAACAATGTTCCATCATCAATGGAATATGAGAGTTGTGTGACACATGACATGGTTGTTGAGATGCACTCACATTCACCAGTGAAATCTGAAAGCTATGAGTTTCAACAACAGCACCACCAAACTTCAGCTTTTTCATGTGTTGAGAATAAAGTGATGAGCTATGAGTGCAACCAGGAACCAACAACAACAACAACAACAAAAGAAGCTGAAAACAACTGTGCAAGTGGTGATGCTGCTGTTGGTGATACTAATAACAACACACAACAAGGGTCATGTTCAAAATCTCAAGTAGGGGTTGCAAGAGGTGAGAGGAGAAAGAGGAAGAGAACAAGGCCAGCAAAGAACAAGGAAGATGTGGAGAACCAGCGCATGACACACATTGCTGTTGAACGCAACAGGAGGCGCCAAATGAATGACCATCTGAGTGTTCTAAGGTCCCTAATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCTTCAATAATTGGAGGTGCAATTGATTTTGTTAAAGAGTTGGAGCAGTTGCTTCAATCACTTGAAGCACAGAAAAGGATGAGAAAGAATGAAGAGGTTGGTTTTGGTTCTTCTTCCAATGTGGGGTTGTCTAATAAGCCATCATCAACATTGCACAGCTCTGGAATGAGGTCATCATCATCCACTGAAGAAGCAAACTGTGGAGATGAGGTTAAGGCAGAAAACAAGTCAGATTCAGCAGAAATAGAGGTAATACTGATCCAAACCCATGTGAACTTGAAAATCCAGTGCCAAAGGAGGCCAGGGCAATTGGTAAAGGCCATTGTTGCTTTGGAGGATCTTAGGCTATCCATTCTGCACCTCAACATTACCTCCTCTGAGGCTTCTGTACTCTACTCTCTCAATCTCAAGATTGAAGAAGGGTGTAAGCTAAGCTCAGCAAATGACATTGCAGAAGCAGTTCACCATATATTCAACTTCATTAATGGTGAACTGAGAAATTGGGTCATTGGGTGGATGCATTGTGGTATGGTGTGGTGGGTTTTATAG 1344 0.4234 MERLQGPLSSCFFGDHLEVNCLEQGFVDAESLRFEEERQFLISSLEDNMPFLQMLQSVEYSPQCFFPLNEPSFQTLLRLQHMKNNNNNNKPWESVAYIPQMENKNHNNNVPSSMEYESCVTHDMVVEMHSHSPVKSESYEFQQQHHQTSAFSCVENKVMSYECNQEPTTTTTTKEAENNCASGDAAVGDTNNNTQQGSCSKSQVGVARGERRKRKRTRPAKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEVGFGSSSNVGLSNKPSSTLHSSGMRSSSSTEEANCGDEVKAENKSDSAEIEVILIQTHVNLKIQCQRRPGQLVKAIVALEDLRLSILHLNITSSEASVLYSLNLKIEEGCKLSSANDIAEAVHHIFNFINGELRNWVIGWMHCGMVWWVL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2129 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 279 IPR011598 GO:0046983
Dod07g2129 447 SMART finulus 234 285 IPR011598 GO:0046983
Dod07g2129 447 MobiDBLite consensus disorder prediction 298 331 - -
Dod07g2129 447 MobiDBLite consensus disorder prediction 183 229 - -
Dod07g2129 447 PANTHER MAX DIMERIZATION, MAD 18 428 - -
Dod07g2129 447 Gene3D - 219 300 IPR036638 GO:0046983
Dod07g2129 447 Coils Coil 276 296 - -
Dod07g2129 447 MobiDBLite consensus disorder prediction 297 339 - -
Dod07g2129 447 CDD bHLH_AtFAMA_like 231 304 - -
Dod07g2129 447 PANTHER TRANSCRIPTION FACTOR BHLH70 18 428 - -
Dod07g2129 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 295 IPR036638 GO:0046983
Dod07g2129 447 Pfam Helix-loop-helix DNA-binding domain 229 280 IPR011598 GO:0046983
Dod07g2129 447 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2129 Dod-Chr7 52630929 52634296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2129 221 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 56.667 1.09e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod07g2129 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2129 - - gmx:100789928 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2129 07 52630929 52634296 Dod07g2129 07 52630929 52634296 ECH