Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2118 ATGTCTCAACAAAGGCAGTTTCAAATGGTGGGTGGTAACAATATTCTAGACCAATACAATGACACAACATTTACAAAGCTATTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACATTGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGACAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAATCCTTCTCCAGTTATTGATGGAAGGAGGGCAAACTGCAATCTTGCATCTCTTGGTGCAAACAAGAATAGACCACCACCAATTCCTCAGCATGGTGCCGGAAGGTTTAGGCAACCACCTGGACTAGTGGCATCATCTTCTTATCATCATGGTTCTACATCTGCATTTCTCCATCAACCCATTGGACAGTACACATTTCCTTATTCTTCCTACGGATATTCTGGATATTCACAAGATACCTTGTATCCTGGGGGCTATTATAATGTCTATGGAGGTCAACATATTTCACCTTATTTCTACCCTTTCTATGGTCAATATGCACATGGTAACCAGGCTCATGGACATGGTTTTGGATTTCAATACCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATTATGGCTCCACAGGGATATTGTCTTTTCCTTATTCAATGGCTTTGCCAACTACTATTAGTACAGCAGCAGCAACAACAACAACTGCAACCACCACAACAATATCACAAAGCGTGGCAGTGGCAGCAACAGTGGTTGGTAGTTCACAAGGCTCTACAACAGCTTCTGAGCAAAATCCTAACAATGAAAAAGAAAATGCTGTCTTGCAAGGGCTAACCACATCAAAAGCTCATGAATCCAAAACTTAG 900 0.4244 MSQQRQFQMVGGNNILDQYNDTTFTKLFVGGLAWETQRDTLRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPPIPQHGAGRFRQPPGLVASSSYHHGSTSAFLHQPIGQYTFPYSSYGYSGYSQDTLYPGGYYNVYGGQHISPYFYPFYGQYAHGNQAHGHGFGFQYPQMAQFPFLPQHYYGSTGILSFPYSMALPTTISTAAATTTTATTTTISQSVAVAATVVGSSQGSTTASEQNPNNEKENAVLQGLTTSKAHESKT* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2118 299 PANTHER - 1 266 - -
Dod07g2118 299 SUPERFAMILY RNA-binding domain, RBD 14 123 IPR035979 GO:0003676
Dod07g2118 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Dod07g2118 299 CDD RRM_RBM24_RBM38_like 25 100 - -
Dod07g2118 299 Gene3D - 1 110 IPR012677 -
Dod07g2118 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Dod07g2118 299 MobiDBLite consensus disorder prediction 266 299 - -
Dod07g2118 299 PANTHER BOULE-RELATED 1 266 IPR037366 GO:0003729
Dod07g2118 299 SMART rrm1_1 26 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2118 Dod-Chr7 52447963 52450583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2118 21 101 C2H2 Transcription Factor Family AT2G19380 44.444 5.19e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2118 - - gmx:100786208 380.948