Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2114 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACTTTGACGACGAAAATTACATGGAAGAGATGGAAGATGATGATGCTGAGGAACAAACAGATGATGATGGAGTGGATGGACGCGGTGAAGAAAATGTTGAAGAGCATGAAGATGAAGACTCGGCGGCAGAGGAGGCTTATGCGAAAGACCAATTGCCTGAGGCAGAGAGAAGCGACATTGCCGCTGCTGAGTCTGAAGAAGACAGGGGAAAACCGTATTTCATTGATGAAGAGGAGAAACAGAAGCATGATGAGCTTCTTTCCCTTCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCAAAGGATGTGTGTGAGGATGATTTGAGGGAATTGTGCGAGCCGATAGGCAATATTTTTGAGGTGCGATTAATGAAAGACAGGGACAGTGGAGAAGGCAAGGGGTTTGCTTTTGTGGCTTTCAAAGAAAAAGAGGTTGCACAAAAGGCCATTGAAGAGTTGCACAATAAGAAATTTAAGAGTAAAACTTTAAGGTGTTCACTATCTGAGACAAAGCAAAGATTGTTCATTGGTAATGTTCCAAAGCATTGGACTGAGGATGAGTTTAGGAAAGTCGTTGAGGGTGTTGGTCCTGGAGTTGAAATCATTGAGCTCTTTAAGGACCCTCAAAATCCAAGCAGGAATCGTGGGTTTGCTTTTGTTTCATATTACAATAATGCATGTGCGGATTATTCACGGCAAAAGATGTCAAGTGCCAGTTTTAAGCTGGATGGAAATACCCCAACTGTCACATGGGCAGATCCAAAGAATTCATCTGATCATACTGCATCTGCACAGGTTAAAGCTCTTTATGTGAAAAACATACCCGAGAATACTACTACTGAACAACTGAAGGAAATATTCTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTAAAGGCTGTAAAAGATTCAGAGAAATATGAAATTGATGGCCAGATGCTTGAGGTTGTTCTTGCCAAACCTCAAGCAGAGAAAAAGCCGGATGCAGCTTATGGCTACAATCCTGTACTTCCACATCCTGGTTATGGTGGTGGTGCCTTTTCTGGAAATCCTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTCCTAGTTTTCAACAGCCGATGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAGATGGTCCCGATGGTATTACCAGATGGTCGAATTGGCTATGTTCTTCAACAGCCTGGTGTACAAATGCCAACACCCCGACCGCCGCGCAGGGTTGATAGGAGCAACGGGCCAAGTGGTCGGCCAGGAAGAGGAGGAGGTGGCGGCAATGATGATGCGAATCGTGGTAGAAGGTATCGACCGTATTAG 1437 0.4489 MSEGAEIDERVDFDDENYMEEMEDDDAEEQTDDDGVDGRGEENVEEHEDEDSAAEEAYAKDQLPEAERSDIAAAESEEDRGKPYFIDEEEKQKHDELLSLPPHGSEVFIGGLPKDVCEDDLRELCEPIGNIFEVRLMKDRDSGEGKGFAFVAFKEKEVAQKAIEELHNKKFKSKTLRCSLSETKQRLFIGNVPKHWTEDEFRKVVEGVGPGVEIIELFKDPQNPSRNRGFAFVSYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSSDHTASAQVKALYVKNIPENTTTEQLKEIFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEIDGQMLEVVLAKPQAEKKPDAAYGYNPVLPHPGYGGGAFSGNPYGSVGAGYGVAPSFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPTPRPPRRVDRSNGPSGRPGRGGGGGNDDANRGRRYRPY* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2114 478 Gene3D - 186 266 IPR012677 -
Dod07g2114 478 CDD RRM3_hnRNPR_like 279 357 - -
Dod07g2114 478 SUPERFAMILY RNA-binding domain, RBD 273 386 IPR035979 GO:0003676
Dod07g2114 478 SMART rrm1_1 106 179 IPR000504 GO:0003723
Dod07g2114 478 SMART rrm1_1 186 263 IPR000504 GO:0003723
Dod07g2114 478 SMART rrm1_1 281 353 IPR000504 GO:0003723
Dod07g2114 478 PANTHER GEO13361P1-RELATED 2 476 - -
Dod07g2114 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Dod07g2114 478 Gene3D - 7 185 IPR012677 -
Dod07g2114 478 MobiDBLite consensus disorder prediction 1 83 - -
Dod07g2114 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Dod07g2114 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Dod07g2114 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 348 IPR000504 GO:0003723
Dod07g2114 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Dod07g2114 478 SUPERFAMILY RNA-binding domain, RBD 102 270 IPR035979 GO:0003676
Dod07g2114 478 Gene3D - 267 397 IPR012677 -
Dod07g2114 478 MobiDBLite consensus disorder prediction 8 52 - -
Dod07g2114 478 MobiDBLite consensus disorder prediction 53 83 - -
Dod07g2114 478 CDD RRM_SF 107 179 - -
Dod07g2114 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Dod07g2114 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 476 - -
Dod07g2114 478 MobiDBLite consensus disorder prediction 435 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2114 Dod-Chr7 52402036 52407115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2114 107 408 Eukaryotic Initiation Factors Gene Family AT1G71770 26.957 1.86e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2114 K13161 - gmx:100800974 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2114 07 52402036 52407115 Dod07g2114 07 52402036 52407115 ECH