Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2107 ATGGATGACTTGATCATCTCACCTTCAACATCCTCATCCTTTGTGCCTCTCCCACAAGAAAGTACCACTCAAACACAACCACTCACCCTTCAGCAAAACCTTCAATTCTTGCTCCAAAGCCAACCCAATTGGTGGGTCTACGCCATATTCTGGCAGGCCACAAACGATGACAATGGCAACCTCTACCTCACATGGGGTGAAGGCCATTTCCAAGGCACCAAAGACACCACCACTTCCCCAAAACCCCAACAACAAGAAGAAGCACCACTCTCACACAACCACTACCAAACTCATGATGAGGAGTCCAACATCGATAGAAGGAAGTTCATGAAGAGCATCCAATCCCTCATAAACGACGACACAAGCACCGACACCAACCTAAACGACGCCGAATGGTTCTATGTGATGTCGTTGACCCGAACTTTCGCCATTGGGAACTCTTCAACTTCTTCGCTGCCCGGTAAGGCCTTTGCCTTGGGTTCGGTGCTTTGGCTCAATAGCAAGGAAGAGCTTCAAATCTACAACTGCGAGAGGGCTAAAGAGGCGCACGTGCACGGCATAGAAACCTTAATCTGCATCCCAACAACCAACGGTGTCATCGAAATGGGTTCCTACAACACCATCCCACAAGATTGGAGCCTCGTCCAACATGCCAAGTCCCTCTTCGATTCCCCATCATCACAAAATTCCATCATCGTGAACAACAACAACAACAACAACAACCAACAAATCTTCGACGACAACAATAACAGCAACAACATTTCCTTCGCCGACATAGGCATCATGTCATGCCTCCAAGACAAGAAACAACAACAACAACTACAAGGGAACAAAGGAAACAAAAGAGAATTAGCACAACAAAAGTTTACTTCATCAGTTCTACTCCAACAATGTTCTTATGTGGACTCCGAGCACTCAGACTCGGATTGCCCATTTTTACTGACTGAAGATTCGTCGGTAAAGAAAGAGTCTCCCAAGAACAAGAGAGGCAGAAAACCCATGGTTCATCGGGAGACCCCGATGAACCATGTGGAGGCTGAGAGGCAACGGAGGGAGAAGCTGAACCATAGGTTCTATGCTCTTCGAGCGGTGGTTCCAAACGTTTCGAGAATGGACAAGGCTTCTTTGTTATCTGACGCTGTTGCTTACATCAATGAATTGAAAGCGAAGATTGAAGATTTGGAGTCACAAAAGGATCATCATCGTAATCAGAAGAAGGTGAAGTTGGAAATGGGGGATGCTACGGATAACCAAAGCACGGTAACCACGAATTCTTCAACCGTGGTTGATCAAAGGGGGCATAATGGTAATAGTAATAGTAATAATGGTGGTGGGGTTGGAGCTGAGGTTGATGTGAAGATCATAGGTGGTGATGCTATGGTGAGGGTTCAGTGTGAGAATGTGAATCATCCTGGTGCTAGGGTCATGGGTGCTTTGAGGGAGTTGGAGTTTCAGGTGCACCATGCTAGCATGACTTGTGTCAATGAGCTTATGCTTCAGGATGTTGTTGTTAAGGTTCCTAAGGGTATGAGAACTGAAGAAAGTCTTCGATCTGCTATTCTCATGAGGTTGGATCAGTAG 1581 0.463 MDDLIISPSTSSSFVPLPQESTTQTQPLTLQQNLQFLLQSQPNWWVYAIFWQATNDDNGNLYLTWGEGHFQGTKDTTTSPKPQQQEEAPLSHNHYQTHDEESNIDRRKFMKSIQSLINDDTSTDTNLNDAEWFYVMSLTRTFAIGNSSTSSLPGKAFALGSVLWLNSKEELQIYNCERAKEAHVHGIETLICIPTTNGVIEMGSYNTIPQDWSLVQHAKSLFDSPSSQNSIIVNNNNNNNNQQIFDDNNNSNNISFADIGIMSCLQDKKQQQQLQGNKGNKRELAQQKFTSSVLLQQCSYVDSEHSDSDCPFLLTEDSSVKKESPKNKRGRKPMVHRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEDLESQKDHHRNQKKVKLEMGDATDNQSTVTTNSSTVVDQRGHNGNSNSNNGGGVGAEVDVKIIGGDAMVRVQCENVNHPGARVMGALRELEFQVHHASMTCVNELMLQDVVVKVPKGMRTEESLRSAILMRLDQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2107 526 CDD bHLH_AtAIB_like 336 410 - -
Dod07g2107 526 Coils Coil 377 411 - -
Dod07g2107 526 MobiDBLite consensus disorder prediction 1 20 - -
Dod07g2107 526 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
Dod07g2107 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 404 IPR036638 GO:0046983
Dod07g2107 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Dod07g2107 526 MobiDBLite consensus disorder prediction 72 91 - -
Dod07g2107 526 MobiDBLite consensus disorder prediction 316 335 - -
Dod07g2107 526 PANTHER TRANSCRIPTION FACTOR BHLH14 1 524 - -
Dod07g2107 526 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 30 222 IPR025610 -
Dod07g2107 526 SMART finulus 344 393 IPR011598 GO:0046983
Dod07g2107 526 MobiDBLite consensus disorder prediction 413 445 - -
Dod07g2107 526 PANTHER MYC 1 524 IPR045084 GO:0003700|GO:0006355
Dod07g2107 526 MobiDBLite consensus disorder prediction 72 97 - -
Dod07g2107 526 Gene3D - 330 414 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2107 Dod-Chr7 52301949 52303942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2107 11 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 31.058 2.75e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod07g2107 bHLH-MYC_N 6.1e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2107 - K13422 gmx:100804965 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2107 07 52301949 52303942 Dod07g2107 07 52301949 52303942 ECH