Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2101 ATGTTAGACCATGTGGAGTATACTTACTCAGCATCAGAAGCTGCAGAGGCAGAAACTTATAGCAGCACAACAAGTCCAGCATCAACATCAGCCATGATGAGAAAGAAGAAAAACAGCAACACAAGGAGGTTCAGTGATGAACAAATCAAGTCATTGGAGTCCATGTTTGAGACTGAGTCAAGACTTGAGCCTAGGAAGAAGCTGCAGCTTGCAAGGGAACTTGGTTTGCAGCCAAGACAGGTTGCTATATGGTTCCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAGAGGGATTACAGCATACTCAGAAACAATTACAACAATTTGGCTTCAAGGTTTGAAGCACTAAAGAAGGAGAAGCAAGCATTATTAGTACAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCACCAGAGCTAGCACAAAGCTCTACACAAGGCAAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGGGACACCACAAAAAGTGAACCTGATTTGAAGCCAAGCACATCATCACTGCAAAGATCAGAACATGTACTTGGCGCTCTCTCAGATGATGACACCAGCATAAAGGTGGAGTACTTTGGAAACATGGAAGATGAACCTGGCCTCATCAATTTTGCTGAGCATGCTGATGGTTCCTTGACATCACCAGAAGATTGGGGTACCTTTGACTCTGATGATCTATTAGGCCAATCAAGCAGTGATTACCAATGGTGGGACTTTTGGTCCTGA 750 0.436 MLDHVEYTYSASEAAEAETYSSTTSPASTSAMMRKKKNSNTRRFSDEQIKSLESMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILRNNYNNLASRFEALKKEKQALLVQLQKLNDLIQKPPELAQSSTQGKAANSMDSESENGDTTKSEPDLKPSTSSLQRSEHVLGALSDDDTSIKVEYFGNMEDEPGLINFAEHADGSLTSPEDWGTFDSDDLLGQSSSDYQWWDFWS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2101 249 SMART HOX_1 33 99 IPR001356 GO:0003677
Dod07g2101 249 MobiDBLite consensus disorder prediction 16 44 - -
Dod07g2101 249 Pfam Homeobox associated leucine zipper 95 136 IPR003106 GO:0006355|GO:0043565
Dod07g2101 249 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Dod07g2101 249 MobiDBLite consensus disorder prediction 16 35 - -
Dod07g2101 249 MobiDBLite consensus disorder prediction 139 160 - -
Dod07g2101 249 MobiDBLite consensus disorder prediction 139 185 - -
Dod07g2101 249 CDD homeodomain 42 96 IPR001356 GO:0003677
Dod07g2101 249 Pfam Homeodomain 42 93 IPR001356 GO:0003677
Dod07g2101 249 SUPERFAMILY Homeodomain-like 21 97 IPR009057 -
Dod07g2101 249 MobiDBLite consensus disorder prediction 168 183 - -
Dod07g2101 249 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Dod07g2101 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 18 249 - -
Dod07g2101 249 Coils Coil 87 135 - -
Dod07g2101 249 Gene3D - 30 102 - -
Dod07g2101 249 PRINTS Lambda-repressor HTH signature 66 75 IPR000047 GO:0003677
Dod07g2101 249 PRINTS Lambda-repressor HTH signature 75 91 IPR000047 GO:0003677
Dod07g2101 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 249 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2101 Dod-Chr7 52173983 52175847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2101 25 249 Homeobox Transcription Factor Family AT2G46680 52.778 3.56e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod07g2101 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2101 K09338 - gmx:100811208 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2101 07 52173983 52175847 Dod07g2101 07 52173983 52175847 ECH
Dod01g3669 01 78138913 78140807 Dod07g2101 07 52173983 52175847 PCT