Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2092 ATGAGGCCGGTTTTTGCTGGAAATTTGGAGTATGATGCCCGTCAATCAGAGCTTGAGCGATTGTTCTCCAAGTATGGGAGGATCGACCGTGTTGACATGAAATCTGGTTTTGCTTTTGTCTACTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGATAATTTTCCATTTGGTTACGAAAAGCGAAGGCTGTCGGTGGAGTGGGCTAGGGGTGAACGTGGGCGCCATCGTGATGGCTCGAGGGCAAACCAGAGGCCCACAAAAACCCTGTTTGTGATTAACTTTGACCCTCTACGTACTAGGGTTCGAGATATAGAGAAACACTTTGAACCTTATGGGAAGATTATTCATGTCCGAATCCGTAGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACAAATATGAGTAAGATACTGGACCGGGTTGTGTCAGTGGAGTACGCTCTGAGGGATGACGGTGAGAGGGGTGACAATTATGACAGTCCTAGAAGAGGGGGGTATGATCGATCCCCTAGTCCAGCTTATTGCAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCCGTGTATGATAGGTATAATGGACCAGACAGGCGTAGGAGCCCCGATTATGGCAGGCCGAGGAGCCCTGAATATGGTAGATACCGCAGCCGTTCGCCAGTACGAAGGTCAAGAACTTAA 720 0.4847 MRPVFAGNLEYDARQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPLRTRVRDIEKHFEPYGKIIHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYDRSPSPAYCRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRPRSPEYGRYRSRSPVRRSRT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2092 239 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 201 IPR029537 GO:0000398|GO:0005681
Dod07g2092 239 MobiDBLite consensus disorder prediction 164 239 - -
Dod07g2092 239 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 201 - -
Dod07g2092 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Dod07g2092 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Dod07g2092 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Dod07g2092 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Dod07g2092 239 MobiDBLite consensus disorder prediction 204 231 - -
Dod07g2092 239 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
Dod07g2092 239 SMART rrm1_1 92 158 IPR000504 GO:0003723
Dod07g2092 239 SMART rrm1_1 3 70 IPR000504 GO:0003723
Dod07g2092 239 Gene3D - 85 173 IPR012677 -
Dod07g2092 239 Gene3D - 1 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2092 Dod-Chr7 52052496 52055802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2092 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.725 1.97e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2092 K12893 - gmx:100797709 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2092 07 52052496 52055802 Dod07g2092 07 52052496 52055802 ECH