Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2086 ATGGGAAGAGCTCCTTGTTGTTCCAAAGTTGGTTTGCACAAAGGTCCATGGACGCCTAGAGAAGATGCACTCCTCACCAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCAAAGAAAGCTGGGCTTCTTAGATGTGGGAAAAGCTGCAGACTCAGATGGATGAACTATCTGAGGCCAGATATAAAGAGAGGGAACATAACCCCTGAAGAAGATGACCTCATAATCAGAATGCATTCACTCTTAGGGAACAAGTGGTCCCTCATAGCAGGAAGATTACCAGGGAGAACAGATAATGAGATAAAGAACTATTGGAACACCCATCTAAGCAAAAAGGTGAAAAGTGAAGGGTCAGATTTGAAAGACCAAGAGCAGCAACAAGAAGGACCATCCAGCAAAAAGAAGAATGATGGCAATAAGAAGAAGAGCAACAACAACCAAAAGAAGAAGCAGAACAAGAAGGACAAGAAGAGCAACAACAAAGGGTCAAACAATGAGGAGCCACAAAAGACACAAGTTTACCTACCAAAACCAATAAGGGTCAAGCCATCATCTTTGCCTAGAACGGATAGCACAACATTCACCTTTGATTCCAACAATACTTCATCACCAATAAGTGCATCAACAAGCCAAGAAGAGAAGGAGCAGGAATTAGAGAACAACATCCCAAAAACAGCAAAAGGTGAAAACATGCTTTGTGAGGTCGGTAATAATAACTTGGAAGAAAACGATGGTTTTGGCTTCTTTTGTGATGATTACGACTTGGTCAACAATTCAGACATGGAATGCCGCCAGTCTTATTTTGCCACAGATCATGGCACACTAGAGAAGCTATATGAAGAGTATTTGCAGCTATTGAATATGGAAGATAACATGTTTGAGTTGGATGCTTTTCCAGAATCTCTTATGGTGTGA 924 0.4145 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHLSKKVKSEGSDLKDQEQQQEGPSSKKKNDGNKKKSNNNQKKKQNKKDKKSNNKGSNNEEPQKTQVYLPKPIRVKPSSLPRTDSTTFTFDSNNTSSPISASTSQEEKEQELENNIPKTAKGENMLCEVGNNNLEENDGFGFFCDDYDLVNNSDMECRQSYFATDHGTLEKLYEEYLQLLNMEDNMFELDAFPESLMV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2086 307 MobiDBLite consensus disorder prediction 116 218 - -
Dod07g2086 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod07g2086 307 MobiDBLite consensus disorder prediction 116 147 - -
Dod07g2086 307 CDD SANT 16 61 IPR001005 -
Dod07g2086 307 Coils Coil 142 162 - -
Dod07g2086 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod07g2086 307 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 293 - -
Dod07g2086 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod07g2086 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod07g2086 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod07g2086 307 Gene3D - 71 116 - -
Dod07g2086 307 CDD SANT 71 112 IPR001005 -
Dod07g2086 307 SMART sant 13 63 IPR001005 -
Dod07g2086 307 SMART sant 66 114 IPR001005 -
Dod07g2086 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod07g2086 307 MobiDBLite consensus disorder prediction 188 214 - -
Dod07g2086 307 Gene3D - 14 66 - -
Dod07g2086 307 PANTHER MYB TRANSCRIPTION FACTOR 1 293 - -
Dod07g2086 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2086 Dod-Chr7 51979677 51981029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2086 1 136 MYB Transcription Factor Family AT4G38620 68.382 9.94e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod07g2086 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2086 K09422 - gmx:100101857 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2086 07 51979677 51981029 Dod07g2086 07 51979677 51981029 ECH
Dod01g3648 01 77874746 77876696 Dod07g2086 07 51979677 51981029 PCT