Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2078 ATGAGCATAAAGCTTGGATGTGTTATCTTGTATTCAAAGCCTGCTAGAAGCACACAAGCTTCACCAGAGTCAAGAGAGCTATCTTTCAGACATGCCTGGGAGCATGGAGGACCAGGCCAGGATTTTGGAATTGATATTGCCGGAGTGAAGGCCATAGTTATGGCAGCTCTTGATATCCATGAAGTCGTGTCTCAAAATTACTTACTTCGATTTATTCAACCAAAAGGAGTAGTGGAAGCTTTCAATTGCAATTTAACTGGTTGCTTTGAGTACCATCTTCCAACGAAGAAGATCTCTGATTCGTTTGAGGATGTTGTTCGTTTCGCTAACGACTCTCCTTGTGGGGTAGGTGATGGTATGTATAATGAGCTATGGAGGTTGTGTGCAGGACCTTTGATGGATGTTCCTAGTTGCGGAGAGAGAGTTTTCTACTTCCCTCAGGGTCACGTAGAACTATTGCAAGAGCCTGGGGATCAGGAGATTAGCCAGGAAAATCCCAAATTCAACCTTCCATCAAAGATTCTTTGCCGTGTTATAGACATTGAGTTTTTGGCAGAGAAGGAGACTGATGAAGTTTATGCTTGTATCACTTTGCTTCCACAACTGGATCAAATTGAGTCTACATTTCCTGATCCATTTTGTTCTGAGGCCCCAAAACAAAAGTTTTACTCATTTTGCAAGACATTAAGTCCCTCAGATACTAGCACACATGGAGGGTGTTCAATTCCGCGGAAGCATGCTGCTGAGTGCCTGCCTCAATTGGACATGACCCAAGAAAACCCAACTCAGGAGTTGGTAGCAAAAGATATTCAAGAGGTTGAGTGGAAGTTTAAGCATATTTATAGAGGTCACCCAAGGAGGCACTTGCTTACAACTGGCTGGGGTTCATTTGTCACGTCCAAGAGATTGCATGCCGGAGATACTTTTATTTTCTTAAGGGGAGAGAATGGGCAACTGAGAGTTGGTGTTAGGCGTATGGCTCCATCACAGAGTCCTATGACTTCAACTGTGGTATCAATTGAGAACATGCGTTTTGGAGTGCTTGCTACTGCTAGCCATTCCGTTAAGAGTAATACCGTATTTAAGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTGGTTTGAACAAATATCTCGAGGCAATGAACAATGAGTTTACGGTTGGCATGCGCTTCAAGATGAGACATGAGGGAGAAGAGTCACTTGACAGAAGGTTTTGTGGTACCATTGTTGGGGTTGGGGATGAGTCTCCAGAATGGCCAAATTCTCAATGGCAGTCGTTGAAGGTTCAATGGGATGAACCAACAACATTTCAAAGACCTGAGAGAGTTTGTTGTTGGGAGATTGAGCCTTTTGTGGCTTCTGCTTTGAATATCATTCAACCGGTTGTAAATTGCAAAAGGTTGAGGCATGCTGGGGCTTCATCTTCTGCTGCTTCAGGTAGCAGAGAAAACCAAGTTGCATGCCCTCTGAGGCAGAAAGACAATAATAGCAATCTTATTAATACCAACTCTAGCAGTTCAAGAGCTGTAGCAGAAGGAACATGGCATTTTCTACATTTGAATGCCAACTCTAACTCATTTCCTGATCCTAAAAATGACAAAGCAGTTGCAGCACAATCATCTAGACCAAGCAATGGGGAAAGGACCGAGAATGCCAAGAATTGCTGGTTATTTGGCGTTAATTTGACCAACGTCTCTAGCAATATCGCCCCTTTGGAGAGAGAACAGGGAAATGGTCCCAGAGAATCTAGTTTTCTTTCTGCTTGCGAGACTGGGAGGGTTCAGGCTCCCAACGACCATTTACTGTCCAACAAAGGCCAGCAGAACCAAATAATTTCTGATAATGGGTGGCAAACCAAGCAGGCCCCTATGCCATCCATGAGGACTAGGACCAAGGTGAAAATGCAAGGTGCTGCAGTTGGTCGTGCATTGGACTTGAGCACTATAAGTGGTTATGATGAGCTCATTGATGAGCTAGAGAAATTGTTTGATATCAAAGGAGAGCTTAGATCACAAAACAAATGGGCAGTTACTTTCACTGATGATGAAAATGACATGATGCTTGTGGGGGATGATCCATGGCAGGAGTTCTGCAACATAGTGAAGAGAATTTTCATTTGCTCAAGGGAGGATTTGATGAAGTTGAAATGCAAGAGAGCTGCTTCTTCATCAGAGGTTGAAGAGGCATTGTTGAGTCACTGTGAATGA 2214 0.435 MSIKLGCVILYSKPARSTQASPESRELSFRHAWEHGGPGQDFGIDIAGVKAIVMAALDIHEVVSQNYLLRFIQPKGVVEAFNCNLTGCFEYHLPTKKISDSFEDVVRFANDSPCGVGDGMYNELWRLCAGPLMDVPSCGERVFYFPQGHVELLQEPGDQEISQENPKFNLPSKILCRVIDIEFLAEKETDEVYACITLLPQLDQIESTFPDPFCSEAPKQKFYSFCKTLSPSDTSTHGGCSIPRKHAAECLPQLDMTQENPTQELVAKDIQEVEWKFKHIYRGHPRRHLLTTGWGSFVTSKRLHAGDTFIFLRGENGQLRVGVRRMAPSQSPMTSTVVSIENMRFGVLATASHSVKSNTVFKVYYKPRTSQFIVGLNKYLEAMNNEFTVGMRFKMRHEGEESLDRRFCGTIVGVGDESPEWPNSQWQSLKVQWDEPTTFQRPERVCCWEIEPFVASALNIIQPVVNCKRLRHAGASSSAASGSRENQVACPLRQKDNNSNLINTNSSSSRAVAEGTWHFLHLNANSNSFPDPKNDKAVAAQSSRPSNGERTENAKNCWLFGVNLTNVSSNIAPLEREQGNGPRESSFLSACETGRVQAPNDHLLSNKGQQNQIISDNGWQTKQAPMPSMRTRTKVKMQGAAVGRALDLSTISGYDELIDELEKLFDIKGELRSQNKWAVTFTDDENDMMLVGDDPWQEFCNIVKRIFICSREDLMKLKCKRAASSSEVEEALLSHCE* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2078 737 PANTHER AUXIN RESPONSE FACTOR 11 479 723 - -
Dod07g2078 737 MobiDBLite consensus disorder prediction 526 552 - -
Dod07g2078 737 SUPERFAMILY DNA-binding pseudobarrel domain 213 351 IPR015300 -
Dod07g2078 737 Pfam B3 DNA binding domain 225 325 IPR003340 GO:0003677
Dod07g2078 737 MobiDBLite consensus disorder prediction 475 502 - -
Dod07g2078 737 Gene3D - 223 326 IPR015300 -
Dod07g2078 737 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 109 530 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod07g2078 737 SUPERFAMILY CAD & PB1 domains 626 706 - -
Dod07g2078 737 Gene3D - 626 718 - -
Dod07g2078 737 CDD B3_DNA 224 325 IPR003340 GO:0003677
Dod07g2078 737 Gene3D - 386 458 - -
Dod07g2078 737 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 479 723 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod07g2078 737 MobiDBLite consensus disorder prediction 476 502 - -
Dod07g2078 737 Pfam AUX/IAA family 673 716 IPR033389 -
Dod07g2078 737 Pfam Auxin response factor 351 430 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod07g2078 737 ProSiteProfiles PB1 domain profile. 630 711 IPR000270 GO:0005515
Dod07g2078 737 ProSiteProfiles B3 DNA-binding domain profile. 225 327 IPR003340 GO:0003677
Dod07g2078 737 Coils Coil 654 674 - -
Dod07g2078 737 SMART B3_2 225 327 IPR003340 GO:0003677
Dod07g2078 737 PANTHER AUXIN RESPONSE FACTOR 11 109 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2078 Dod-Chr7 51881669 51899818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2078 117 717 B3 DNA Binding Superfamily AT4G23980 51.151 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod07g2078 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2078 K14486 - gmx:100790981 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2078 07 51881669 51899818 Dod07g2078 07 51881669 51899818 ECH