Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2076 ATGGAGGAGCAACAACCACCAACGGCCTCCACCACCACTTCAACAAGCACCACCACTACCACGACGCGCGTAAGCAGAACGCGCCACCCAGTCTACCGTGGAGTCAGAAAACGCCGCTGGGGGAAATGGGTCTCCGAAATCAGAGAACCTCGCAAGAAGTCACGCATATGGCTCGGCTCATTCCCTTCGCCGGAGATGGCCGCCAAAGCCTACGACGTCGCCGCTTACTGCCTCAAAGGCCGTAAGGCTCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCTCCGCTACCTCCGCCGTCGTCCCGCACAGCACGTGACATCCAGGCTGCCGCCGCAAAGGCCGCACACATGGCCGCAGTCGTAACATCCGCCGCCGCAGACGGTGAGGAGCTGCCGAAGAAGTGCGGCATTATTTCCTGCGATGGTGGTGATGGTGGCGGTGGCGGTGGTGGTGGTGATGATTTCTGGGGTGAGATTGAGCTGCCGGAGCTAATGAATGACGACGGGTGGACGAAAATGGCGTGGCCGGAGATTGAGATGATGCCGCAGCAGCAACCGTTCACGGCGTGCCTATAG 579 0.6079 MEEQQPPTASTTTSTSTTTTTTRVSRTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPSPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPPPSSRTARDIQAAAAKAAHMAAVVTSAAADGEELPKKCGIISCDGGDGGGGGGGGDDFWGEIELPELMNDDGWTKMAWPEIEMMPQQQPFTACL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2076 192 CDD AP2 32 89 IPR001471 GO:0003700|GO:0006355
Dod07g2076 192 MobiDBLite consensus disorder prediction 1 30 - -
Dod07g2076 192 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Dod07g2076 192 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Dod07g2076 192 MobiDBLite consensus disorder prediction 1 27 - -
Dod07g2076 192 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Dod07g2076 192 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
Dod07g2076 192 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Dod07g2076 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 192 - -
Dod07g2076 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 192 - -
Dod07g2076 192 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Dod07g2076 192 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2076 Dod-Chr7 51868263 51869136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2076 8 172 AP2-EREBP Transcription Factor Family AT1G01250 59.036 1.50e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod07g2076 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2076 K09286 - gmx:100802845 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2076 07 51868263 51869136 Dod07g2076 07 51868263 51869136 ECH