Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2072 ATGGAATCTGGTGATAGCACTGTATCATCATTGATCATGATGGATGATGACGATGATAGGCATCCCCATCAGTATTCTTCAAACACCACCAAGGTGCATAGCAGTGGTGGCCCCACAGCTACTAGTGTCCATGAGCTTCTTGAGTGCCCTGTCTGCACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGTCATACCCTTTGTTCAACTTGTAAGACAAGGGTACATAATCGGTGCCCGACATGTAGACAGGAACTTGGTGATATAAGGTGTTTGGCATTGGAGAAGATAGCAGAATCACTAGAATTGCCTTGCAGATATAACTCTCTTGGGTGTCTAGAGATATTTCCCTATTACGGCAAACTCAAACATGAGTCTATTTGTAACTTCAGACCTTACAACTGCCCCTATGCTGGCTCAGACTGTTCTGTTGTTGGGGATATTCCATACCTCGTTGCTCATTTAAGGGATGACCATAGGGTAGATATGCATTCCGGGTGCACCTTTAACCATCGCTATGTCAAATCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTGACAGTCTTCCACTGTTTCGGTCAGTACTTTTGTCTCCATTTTGAAGCCTTCCAGCTTGGTAAGGCTCCGGTTTACATGGCATTCCTCCGTTTCATGGGCGATGAAAGAGAGGCACGGAGCTATAGCTACAGCTTGGAGGTAGGAGGAAACGGGCGAAAACTAGTTTTTGAGGGCAGTCCAAGAAGCATTAGAGATAGCCACAAGAAAGTTAGGGACAGCCATGATGGCCTCATTGTATACAGAAACATGGCACTCTTCTTCTCAGGTGGAGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGTGTGTGCATACCAAACCTGTGCAGCTAG 936 0.4541 MESGDSTVSSLIMMDDDDDRHPHQYSSNTTKVHSSGGPTATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYNSLGCLEIFPYYGKLKHESICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGKAPVYMAFLRFMGDEREARSYSYSLEVGGNGRKLVFEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2072 311 PANTHER UBIQUITIN LIGASE SINAT3 5 303 - -
Dod07g2072 311 Pfam Seven in absentia protein family 91 290 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dod07g2072 311 MobiDBLite consensus disorder prediction 1 37 - -
Dod07g2072 311 SUPERFAMILY TRAF domain-like 102 294 - -
Dod07g2072 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 101 IPR013083 -
Dod07g2072 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 290 IPR008974 GO:0005515
Dod07g2072 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 303 - -
Dod07g2072 311 ProSiteProfiles Zinc finger RING-type profile. 49 85 IPR001841 -
Dod07g2072 311 ProSiteProfiles Zinc finger SIAH-type profile. 102 162 IPR013010 GO:0008270
Dod07g2072 311 SUPERFAMILY RING/U-box 39 88 - -
Dod07g2072 311 CDD Sina 163 291 - -
Dod07g2072 311 CDD RING-HC_SIAHs 47 85 - -
Dod07g2072 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2072 Dod-Chr7 51797724 51801616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2072 26 297 C3H Transcription Factor Family AT2G41980 76.103 1.80e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2072 K04506 - gmx:100792687 599.356