Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2065 ATGGGCATCCTGAAGGTCCTTTTTTACTTCTTCATCTTCCCTGTCATATTTGCCTCGAGTGACTGCCAAAGCGGTGTGTGTGGCGACAGCAGTATTCGTTTCCCCTTTCAACTACGAGGTGATCAAAATCCTTATTGTGGCTATCCTGGTTTCAAATTAATGTGTGTCAATGATAGCAAAACAGTTCTAAATCTTCCTTTCTCTGGAAGATTCTACGTACACAACATAAACTATCTCACACAGTATATACAAGTATACGACCCTGATCAGTGCCTTCCCAAACGTCTTCTTAACCTCAATCTTTCAGGTTCTCCCTTCACAGCCACTTTGAGTCGTAACTACACCTTCTTAAGCTGCCCATCTCAAAACTCAGGGTCGCATGTCATTCCCATTAACTGCCTTAGCAATTCCACAAATTTTGTATCAGCAATCCCTTCAGTGGACTTGGCCAATCCATTGCCTGATTCTTGCAATGTTATCGGAAGGCTTTCGGTTCGGGTTGCAACGCCATCTGCGGGAAATATCAGCGATGAACTTAGTCAAGATCTTCAATTAACATGGAATAAGCCTGACTGTAGAAACTGTGAATCACAAGGGCTAATGTGTGGATTTAACAGCACTACCAGTGATCAAGTTAGCTGTTCCTCTGATTACCAAACAGGTCCTTCACGTGGACTCCTGTTTTTTAGAATCATCGCATTATGCATTGTTGGACCAGCTTCAACCTTTGCTATTGTGATGGCATGCTGCGTGTGCTTCAAGGACAGTATGGCCTATGCTTCTTCTGCTTCACTGAGGAGGCCTCAACCAGCTGCAGTAACACCACAACCTGAACTTGCCATTACCACTACTACTATGGGTCTTGATGAGTCCACAATAGAGTCTTATGGGAAGCTTGTGCTTGGGGAGAGTAAAAGGCTTCCACCAGGTCCCAATGATGGAACTTGCTGGATATGCTTGTCAGAGTACAACTCCAAAGAGACCATAAGGTGCATCCCTGAATGCAAACACTGCTTCCATGCTGAGTGCATTGATGAGTGGCTTAGAATGAATAGCACTTGCCCAGTTTGCCGCAACACTCCCTCCCCTTCTCCTGTTCATGATCATGCTATGTCTAGTGGCCCTTGA 1128 0.4486 MGILKVLFYFFIFPVIFASSDCQSGVCGDSSIRFPFQLRGDQNPYCGYPGFKLMCVNDSKTVLNLPFSGRFYVHNINYLTQYIQVYDPDQCLPKRLLNLNLSGSPFTATLSRNYTFLSCPSQNSGSHVIPINCLSNSTNFVSAIPSVDLANPLPDSCNVIGRLSVRVATPSAGNISDELSQDLQLTWNKPDCRNCESQGLMCGFNSTTSDQVSCSSDYQTGPSRGLLFFRIIALCIVGPASTFAIVMACCVCFKDSMAYASSASLRRPQPAAVTPQPELAITTTTMGLDESTIESYGKLVLGESKRLPPGPNDGTCWICLSEYNSKETIRCIPECKHCFHAECIDEWLRMNSTCPVCRNTPSPSPVHDHAMSSGP* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2065 375 Pfam Ring finger domain 315 358 IPR001841 -
Dod07g2065 375 SUPERFAMILY RING/U-box 312 361 - -
Dod07g2065 375 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 367 - -
Dod07g2065 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 363 IPR013083 -
Dod07g2065 375 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 367 - -
Dod07g2065 375 SMART ring_2 316 357 IPR001841 -
Dod07g2065 375 Pfam Wall-associated receptor kinase galacturonan-binding 22 87 IPR025287 GO:0030247
Dod07g2065 375 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Dod07g2065 375 Pfam Wall-associated receptor kinase C-terminal 156 215 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2065 Dod-Chr7 51706667 51709399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2065 22 363 C3H Transcription Factor Family AT2G25410 43.266 2.34e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2065 - - adu:107463372 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2065 07 51706667 51709399 Dod07g2065 07 51706667 51709399 ECH