Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2062 ATGCCAATGCCCCCTGCAAAGCTCTTGTTCTTCTCTCAACTCCGCCTCTTCCCTCTTTCTTCCTTCACCATGAGCATGACCCCTTCCTTCCCTTCTTCTAGAACCTTCTTCTCTTCTTCTTCTTCTTCTTCTTTCCCTTTCCCCTTCAAGTTCAAGTACCTCGCCCTCCGAAACGCACCGTTTCGAACCCGCCCCTTATCCTCCTCCTCCTCTTCCAGGACAACTCGCTCCGAGTTCACTCGCTCCAAAACTCGCCCTCGCCGCCGGGAAAACAACGACAACCCTCGCCCTTCTTCTTCTTCTTCGAAGAGCCTTGTTGATGACGAGGCCGAGCTCAGCGACTGGGTCGACGAGTTGAGAACCGCCCGAGTCGACGACGACCAGTTGACTCGGAGCAGCAGGAGCAGGCCGAGTCGTGACCGGGTCGACGACTCGTTCTCGAGGAATCCTAGGTTTTCGCGGGCGGGATTCAATCGCGAATTGGAGAATGGTGGTGGTGGTGATGAATTGAGGTGGAGGAAGAAGAGAATGGGTGGTGAGTTGAGGAGAGGAGGGACAGGGAAGAGTGCTAGGAGGGGAAGGATTCCATTGAAGGGTGATGATGATGATGATGAGGTTGTGGTGGTGGAGAGAGGAGGAAAGGGATTGAAGGGTTTTCTTAGTAGTGAAGAAGAAGAAGAAGAGGGTGGTGGTGAGAGCGATGATGATGATGAGATATTGAACAAGAGTAGAAGTGCTCTGTTTGGTGGAACTCAACAACCAGCTTCTTCTCCAAGGGCTTCTTCTTCAACTGGGGGTTCTGATTCTTACTTGAGTGAAACCAGATTCGACCAATGCTCAATCTCCCCATTATCATTAAAAGGAGTCAAGGATGCCGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACTCTTCCGTTAATACTGAAAGGTAAGGATGTTCTCGCCAAGGCTAAGACAGGAACTGGAAAAACAGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCTCCAACTGATCGTGATCATAGGCGGCCACCAATTCTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTTCAGCAGAAGCTACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAGGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGATTTGCAACTCGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGATATGGGATTTCGGAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACACTTCTGTTTTCTGCCACCATTCCAGAAGAGGTGCGTCAAATCTGTCATATTGCATTGAGAAGGGACCATGAATTTATCAATACGGTTCAAGAGGGTTCTGAGGAGACGCATTCACAGGTTCGCCAGATGCATTTAGTTGCCCCATTAGACAAACATTTCTCTTTACTCTATGTTCTTCTGAAGGAGCATATTGCAGATGATGTTGACTACAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTAGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTCAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAAGAATTTCGGAAGTCAAAGGGACTCATCCTGGTTACATCCGATGTATCTGCACGCTGGAGTTGA 1791 0.4757 MPMPPAKLLFFSQLRLFPLSSFTMSMTPSFPSSRTFFSSSSSSSFPFPFKFKYLALRNAPFRTRPLSSSSSSRTTRSEFTRSKTRPRRRENNDNPRPSSSSSKSLVDDEAELSDWVDELRTARVDDDQLTRSSRSRPSRDRVDDSFSRNPRFSRAGFNRELENGGGGDELRWRKKRMGGELRRGGTGKSARRGRIPLKGDDDDDEVVVVERGGKGLKGFLSSEEEEEEGGGESDDDDEILNKSRSALFGGTQQPASSPRASSSTGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPLILKGKDVLAKAKTGTGKTVAFLLPSIEVVANSPPTDRDHRRPPILVLVICPTRELASQASAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATIPEEVRQICHIALRRDHEFINTVQEGSEETHSQVRQMHLVAPLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARWS* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2062 596 MobiDBLite consensus disorder prediction 164 224 - -
Dod07g2062 596 MobiDBLite consensus disorder prediction 126 148 - -
Dod07g2062 596 Pfam DEAD/DEAH box helicase 299 476 IPR011545 GO:0003676|GO:0005524
Dod07g2062 596 MobiDBLite consensus disorder prediction 245 271 - -
Dod07g2062 596 MobiDBLite consensus disorder prediction 126 271 - -
Dod07g2062 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 483 IPR027417 -
Dod07g2062 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 594 IPR027417 -
Dod07g2062 596 Gene3D - 248 489 IPR027417 -
Dod07g2062 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 488 IPR014001 -
Dod07g2062 596 MobiDBLite consensus disorder prediction 78 94 - -
Dod07g2062 596 SMART ultradead3 293 506 IPR014001 -
Dod07g2062 596 CDD DEADc_MSS116 281 490 - -
Dod07g2062 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 274 302 IPR014014 GO:0003724
Dod07g2062 596 MobiDBLite consensus disorder prediction 63 109 - -
Dod07g2062 596 MobiDBLite consensus disorder prediction 63 77 - -
Dod07g2062 596 PANTHER RNA HELICASE 228 594 - -
Dod07g2062 596 Gene3D - 497 594 IPR027417 -
Dod07g2062 596 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 228 594 - -
Dod07g2062 596 Pfam Helicase conserved C-terminal domain 522 593 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2062 Dod-Chr7 51537703 51544048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2062 274 594 Eukaryotic Initiation Factors Gene Family AT3G19760 26.444 2.29e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2062 - - adu:107463398 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2062 07 51537703 51544048 Dod07g2062 07 51537703 51544048 ECH