Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2003 ATGTCTTCCTTCTCTTCTTCTCCACCACCACCCTCCACCACCGCCACTGCCACATACCTTACCAGCCTTGGCTTCGGTTACTCCATAGCTATTAAACTTGGCTTCCTCTTCCTCCTCTCCACCATCATCATCTCCTCTTACCTTTGTTGCCGCACCCTCCGTAACAACAACAACAACAACAACAATAACCGCACCAATGACAGTGTCGTTTTGCCCCGCGTGATCTTCATCGCAGAAGATGATGATGCTGAGCAAAACGACAACGTGGTACTAGGTCTAGACCAGACCGTGATAAACTCGTACCCTAAGTTCCAGTACAACAAGGATAGTGTAGGAGGAAACGACAGCTTTTGTTCGATCTGTTTGTGCGAGTACAAGGATTCGGAGATGGTGAGGATGATGCCGGAATGCCGGCACTGCTTCCACGCTTGTTGTCTCGACGCGTGGCTGAAGCTCAATGGGTCGTGTACGGTTTGCAGGAACTCGCCCATGCCCACGCCTATGTCCACGCCGTTGCAGGAGGTGGTGCCTCTCCCTCGCTATGCCGCTGATCATAGGAGGCCAAAGAGTTGA 573 0.5201 MSSFSSSPPPPSTTATATYLTSLGFGYSIAIKLGFLFLLSTIIISSYLCCRTLRNNNNNNNNNRTNDSVVLPRVIFIAEDDDAEQNDNVVLGLDQTVINSYPKFQYNKDSVGGNDSFCSICLCEYKDSEMVRMMPECRHCFHACCLDAWLKLNGSCTVCRNSPMPTPMSTPLQEVVPLPRYAADHRRPKS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2003 190 PANTHER RING-H2 FINGER PROTEIN ATL67 12 187 IPR044289 GO:0016567|GO:0016740
Dod07g2003 190 Pfam Ring finger domain 118 160 IPR001841 -
Dod07g2003 190 SUPERFAMILY RING/U-box 98 166 - -
Dod07g2003 190 PANTHER RING-H2 FINGER PROTEIN ATL67 12 187 - -
Dod07g2003 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 164 IPR013083 -
Dod07g2003 190 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2003 Dod-Chr7 50855963 50856535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g2003 21 178 C3H Transcription Factor Family AT5G07040 39.375 5.79e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2003 - - pvy:116141324 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0673 01 11408560 11409858 Dod07g2003 07 50855963 50856535 PCT