Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1978 ATGGCAGCTGTTAGGTTTTCCCATGTAAAACGTTTCCAGAGTTCAATCAAGGGTTCTCTGAACTTGGAATATGTTCAACAGTACCACCCTAGTGTGGATATGAACCCTATAAGAATTGCAAGGTTTCCTAGTTATTCATTAAGTCATCTTTATTCCAAAGGGGAGTTACAATCACCTCAAGTTTTTGCTGAGAACCGGTTGAGTAGCTTGGCTTCTGAATCTCATGTTAGTAGTGCCTTCATCAGTACCAAACTCAATGCATCATTTCATCACAGATTGTCATCTAGCTTTTGTTACCCGGCTGCTCTTCCTTTTGCTTCGGTGACCCACATGTTGAATTGCCGGATGTATTCTTCATCTTTGGGTGGAAAAGGAGGCAGGGATGATGGCACAGTAGTTGCTGCTGGTTCTGGTGCTAGTGATGTGAATGCCGGGGGTGATTCTGTTGTTGGTGGTGATTTGGCTGAGAAGATTAAAGATGCGTGGAAGAGTGTGGTGGATACAGCAACACATGCTGGCCAAAAGGTTAAAGAGACCTCTGATGAGCTGACTCCGTATGCTCAACAGTTGCTTGATTCACATCCATATCTTAACAAGGTGGTAATTCCAGTTGGTGGTACTGTAACTGCAACTCTAGTGGCTTGGTTCTTGATGCCTTGGATTTTGAGGAAATTTCACAAGTATGCAATGAAAGGTCCTATTTCTCTAATTCCTGGAAGCTTATCTGGGGAGCCAGTTGCTTATGAGAAAAGCTTTTGGGGTGCCATGGAAGACCCAGTGCGATACTTAGTTACCTTCGTGGCATTCTCACAAATTGGTGCAATGGTGGCTCCAACAACTATAACCATGCAATATCTTGCACCTGCTTGGAGGGGTGCAGTGATTCTTTCATTTGTATGGTTTTTGCATAGATGGAAGACAAATGTTTTTGCGCGTACATTGTCCGGTAAAGGTTTACTTGGGCTTGATATGGAGAAATTGTTGGCTCTAGACAAAATCTCATCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGCGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATAGGAGGTGTGGCTACTGCTTTTGCTGCAAAAGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTGGAAGCCCTTTTCAATTGGAGATACCATAAAAGCTGGCTCAGTTGAGGGTCAGGTTGTGGAAATGGGTCTTACTACCACGTCATTGCTGAGTGCTGAGAATTTCCCAGTCATAGTGCCAAACTCCTTTTTTTCTAGCCAGGTTATAGTGAACAAGTCCCGTGCTGAATGTCGTGCCATTATGACCAAAATTCCTCTGCAAATTGAGGATTTAAGTACAATTCCCCGGATATCGGATGATGTAAAGAGCATGCTAAGATTACATGCAAAGGTTTTCTTGGGAAAAGATGTTCCTTACTGTTTCTTGTCGCGTTTGGAAAGTTCGTATGCCGAATTGACGCTTGGATACAATCTCAAACACATGCGCAAAGATGAGTTATATGCTGCAGAACAGGACATTCTCCTGCAGGCAGTTCAGATAATTAGGAATCACGGCGTTGCACTAGGCAATACATGGCAAGACATGAATACCGAAAGATGA 1641 0.4321 MAAVRFSHVKRFQSSIKGSLNLEYVQQYHPSVDMNPIRIARFPSYSLSHLYSKGELQSPQVFAENRLSSLASESHVSSAFISTKLNASFHHRLSSSFCYPAALPFASVTHMLNCRMYSSSLGGKGGRDDGTVVAAGSGASDVNAGGDSVVGGDLAEKIKDAWKSVVDTATHAGQKVKETSDELTPYAQQLLDSHPYLNKVVIPVGGTVTATLVAWFLMPWILRKFHKYAMKGPISLIPGSLSGEPVAYEKSFWGAMEDPVRYLVTFVAFSQIGAMVAPTTITMQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSGKGLLGLDMEKLLALDKISSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFWKPFSIGDTIKAGSVEGQVVEMGLTTTSLLSAENFPVIVPNSFFSSQVIVNKSRAECRAIMTKIPLQIEDLSTIPRISDDVKSMLRLHAKVFLGKDVPYCFLSRLESSYAELTLGYNLKHMRKDELYAAEQDILLQAVQIIRNHGVALGNTWQDMNTER* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1978 546 SUPERFAMILY Sm-like ribonucleoproteins 374 439 IPR010920 -
Dod07g1978 546 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 289 373 IPR011014 GO:0016020
Dod07g1978 546 Pfam Mechanosensitive ion channel 332 534 IPR006685 GO:0016020|GO:0055085
Dod07g1978 546 Gene3D - 390 438 IPR023408 -
Dod07g1978 546 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 82 541 - -
Dod07g1978 546 Gene3D - 290 389 - -
Dod07g1978 546 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 82 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1978 Dod-Chr7 50564759 50574647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1978 102 541 Mechanosensitive Ion Channel Family AT4G00290 61.818 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1978 K22047 - gmx:100789047 796.578