Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1965 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAGCCTCATCTGCATGGAACGCCAGTGTATTACTATTGCCCTCCAACTTTGGAAGAGCGGGAGTCTTTAACCTCTAATGATGGTACAGCTAGTTCACTTGCCACAGGCTTGCTTATTGGTTTGAACCTGGAAGCATCCATACCTGATACTTACCAGCCCCCTCCGGCACCTTTGCCTTATGATGTGGTCCCGGGAGGTATAGCATCAACAGATTCTGAGTCAGGCAGAGAAACAGTTAGTGGTAGTAGTTTTGAAACTTTAATTACATGTGAAGATCTTGAAGAATCAGATCCTATGGCTCAAGCAAATACTGCATCTATATCTCCAAGGAAGCCAGAACTTTTAAAATCAAATGAATCTCATGCATTAGTGACAGAAGAAGAGGATGTTTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACGAATTGCGAACACCACTTTCACTTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCATGCCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAATTAG 576 0.4236 MGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGTASSLATGLLIGLNLEASIPDTYQPPPAPLPYDVVPGGIASTDSESGRETVSGSSFETLITCEDLEESDPMAQANTASISPRKPELLKSNESHALVTEEEDVCPICLEEYDVENPKTLTNCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1965 191 SUPERFAMILY RING/U-box 132 187 - -
Dod07g1965 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Dod07g1965 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 191 - -
Dod07g1965 191 SMART ring_2 140 180 IPR001841 -
Dod07g1965 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 191 - -
Dod07g1965 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Dod07g1965 191 Pfam Ring finger domain 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1965 Dod-Chr7 50226024 50229956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1965 1 191 C3H Transcription Factor Family AT4G00335 58.639 2.95e-76 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1965 - - adu:107472508 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0727 01 13117652 13121929 Dod07g1965 07 50226024 50229956 PCT