Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1952 ATGCTAACCTTGTTTGCAAGCTCAGTGACTTTGGAATCTCTCGTATATTATCTTGCCTGCGAGAGTTCTAGTAGCAGTACAGAGTGTTGGATAACTAATCCAATGGGAACTCCTGGCTACATGGATCCTGTATTCTTTAGTACTGGGGAACTTACTCCAAAGTCAGATGTTTATTCATTTGGAATCATACTATTACAATTGTTGACTGGGAGGAAGGCCGTGGGAATACCAAAGGTAGTGCAATGTGCTTTAGATGCTGGAAAGTTGAATTCCATCCTGGATCCTTCAGCTGGAGACTGGCCATTTACACAAGCCGAAGAGTTGGCTCGCTTGGCTTTGAGATGCTGTGAGATGAACCGGAAGAACCGGCCAAACCTTTATTCAGATGTTTGGAAGATACTGGCACCTATGAGGGCTTCTCTTGTAGGTGAAAACACCCTTGGACTAGGTTCTCAAGGGCTTCACCAGCTGCCTCCTTATTTTATTTGCCCAATCTTGCAGGAAGTCATGGAAGATCCCCACGTGGCGGCGGATGGTTACACTTATGAAGCTAAGGCTATACGAGAATGGCTGGAGAGTGGTCATGACACTTCACCGGTAACAAAGTCCAAGCTTGCGCACGGCATTCTCATTCCCAACCGTTCTCTTCACTCTGCAATCCAGGACTGGCTTGAAAGTCACTGA 684 0.4635 MLTLFASSVTLESLVYYLACESSSSSTECWITNPMGTPGYMDPVFFSTGELTPKSDVYSFGIILLQLLTGRKAVGIPKVVQCALDAGKLNSILDPSAGDWPFTQAEELARLALRCCEMNRKNRPNLYSDVWKILAPMRASLVGENTLGLGSQGLHQLPPYFICPILQEVMEDPHVAADGYTYEAKAIREWLESGHDTSPVTKSKLAHGILIPNRSLHSAIQDWLESH* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1952 227 Pfam U-box domain 158 227 IPR003613 GO:0004842|GO:0016567
Dod07g1952 227 Pfam Protein kinase domain 21 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod07g1952 227 ProSiteProfiles Protein kinase domain profile. 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod07g1952 227 Gene3D Transferase(Phosphotransferase) domain 1 14 145 - -
Dod07g1952 227 ProSiteProfiles U-box domain profile. 156 227 IPR003613 GO:0004842|GO:0016567
Dod07g1952 227 SUPERFAMILY Protein kinase-like (PK-like) 19 138 IPR011009 -
Dod07g1952 227 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 20 223 - -
Dod07g1952 227 SMART Ubox_2 160 223 IPR003613 GO:0004842|GO:0016567
Dod07g1952 227 CDD RING-Ubox_WDSUB1_like 161 202 - -
Dod07g1952 227 PANTHER OS02G0152300 PROTEIN 20 223 - -
Dod07g1952 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 227 IPR013083 -
Dod07g1952 227 SUPERFAMILY RING/U-box 154 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1952 Dod-Chr7 50054134 50055365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1952 32 227 U-box Gene Family AT2G45910 63.776 1.69e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dod07g1952 Pkinase 1.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1952 - - gmx:100781596 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1952 07 50054134 50055365 Dod07g1952 07 50054134 50055365 ECH
Dod07g1952 07 50054134 50055365 Dod01g0750 01 13473488 13480268 ECH