Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1930 ATGGATCGAGGGGACCAAATGGCATCTTACTATATGCAGAGAGGGATGCCTGGTTCTGGAGCGCCACAACCCGAGTTGCACAATTCGCCTAGTATTCGTCCAATGTCGAATCCCAATCTGCCATTCCAATCAAGCATTGGGGGTAGTAACATTGGATCCACATTGCCAATGGAATCTTCGGGAATTTCATCTCAATGTGTCAATGTTGGTGCTCCTTCTGGGGCTCCACCTGGGGAGCCAGTCAAAAGGAAGAGAGGTAGGCCTAGGAAGTATGGTCCTGATGGAACTGTTTCACTGGCATTGACTCCAACGCCGGCTAGTCATCCTGGAACCATGCCACAAGGCCAGAAACGGGGTAGAGGGCGCCCGCCTGGGTCCGGGAAGAAACAGCAGCTGGCTTCTCTTGGTGAATTGATTTCTGGTTCGGCTGGGATGGGTTTCACCCCTCATATCATCACCATTGCAATTGGAGAGGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGGCCTAGAGCTATATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGCCAACCTTCAACATCAGGTGGCTCTGTCACATACGAGGGGCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTGCTTACTGAAAGTGGTGGCGCGCGGAATCGAACTGGTGGACTAAGTGTTTCCCTTGCTAGTCCTGATGGCCGTGTCATCGGTGGAGGAGTTGGCGGAGTGCTTATTGCAGCAAGTCCAGTTCAAGTGATAGTTGGGAGCTTTGTATGGGGTGGACCCAAGGCGAAGAACAAGAAGAAGGAAGGCTCCGAAGGCACAGAGGTTGCTGTGGAGTCGGATCATCAGACAGTTCATAATCCGGTCGCGGTGAATAGCATTTCCCCTAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCATGGCCTGCTTCACGACCATTGGATATGCGTAATTCCCATATTGACATCGATTTAATGCGAGGGTGA 1008 0.503 MDRGDQMASYYMQRGMPGSGAPQPELHNSPSIRPMSNPNLPFQSSIGGSNIGSTLPMESSGISSQCVNVGAPSGAPPGEPVKRKRGRPRKYGPDGTVSLALTPTPASHPGTMPQGQKRGRGRPPGSGKKQQLASLGELISGSAGMGFTPHIITIAIGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLTESGGARNRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIVGSFVWGGPKAKNKKKEGSEGTEVAVESDHQTVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1930 335 Gene3D - 149 292 - -
Dod07g1930 335 MobiDBLite consensus disorder prediction 298 318 - -
Dod07g1930 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 311 - -
Dod07g1930 335 MobiDBLite consensus disorder prediction 298 316 - -
Dod07g1930 335 MobiDBLite consensus disorder prediction 1 132 - -
Dod07g1930 335 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Dod07g1930 335 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Dod07g1930 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 268 - -
Dod07g1930 335 CDD DUF296 148 262 IPR005175 -
Dod07g1930 335 ProSiteProfiles PPC domain profile profile. 143 283 IPR005175 -
Dod07g1930 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 263 IPR005175 -
Dod07g1930 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 311 IPR039605 GO:0003680
Dod07g1930 335 MobiDBLite consensus disorder prediction 24 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1930 Dod-Chr7 49818239 49825034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1930 1 335 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.667 1.93e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1930 - - gmx:100799791 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1930 07 49818239 49825034 Dod07g1930 07 49818239 49825034 ECH
Dod01g0768 01 14043046 14049419 Dod07g1930 07 49818239 49825034 PCT