Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1925 ATGGGAAGGGCACCATGTTGTGAGAAGACGGGGTTGAAGAAAGGTCCTTGGACACCTGAAGAGGATGAGATTCTTGTTAATTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCAAAGTTGGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTTAGGTGGACAAATTACCTTAGGCCTGATATTAAACGTGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCGTACAACTTCATGGCATCCTTGGAAATAGGTGGGCTGCTATTGCCTCTCAGCTACCTGGAAGGACAGACAATGAGATCAAGAATTTATGGAACACACATTTGAAGAAGCGCCTCATAGGCATGGGGCTTGATCCACAAACCCACATGCCAGTGGCCTCTTCATGTTACCCTATTAACAAGTCACAGGCATCTGTTTCCACCAGGCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAAGCAGAAGCTAGACTCTCAAGGGAGTCATCTTTGTTCAACAATAACCATCCTCCTTCATTTATTGGCAACAACAAAACTGATGATGATTCTGATTATTTCCTCAAGATTTGGAACTCACAAGTTGGTGAATCTTTTAGGAATATTCAAAAAGCTGATGACAAAAGTACTAGTCCTATTTCTCAAGGATCATCTTCCAACAAGTGTGGCTCAGTTTCTGCCATGACAAGTGAATTGGCCTCCAACCCTGTTGGATCAACAACCCCAGCAAGCAATTCAAGCAACTTGAAGGAAGATGTGGAATGGAGCTACTCCAAGTCATCATTTGCTGCTGGTGTTATTCCAGGAGGGTCTGATTCATCAAGCTCTAATGACTTGGAAGACTCATCTGACAGTGCATTGCAGCTATTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGAGAACTCTTTTATTAGCCCCCTCTAG 948 0.4388 MGRAPCCEKTGLKKGPWTPEEDEILVNYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVVQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLIGMGLDPQTHMPVASSCYPINKSQASVSTRHMAQWESARLEAEARLSRESSLFNNNHPPSFIGNNKTDDDSDYFLKIWNSQVGESFRNIQKADDKSTSPISQGSSSNKCGSVSAMTSELASNPVGSTTPASNSSNLKEDVEWSYSKSSFAAGVIPGGSDSSSSNDLEDSSDSALQLLLDFPINNDMSFLEENSFISPL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1925 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod07g1925 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dod07g1925 315 PANTHER PROTEIN ODORANT1-LIKE 1 309 - -
Dod07g1925 315 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Dod07g1925 315 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod07g1925 315 CDD SANT 16 62 IPR001005 -
Dod07g1925 315 MobiDBLite consensus disorder prediction 207 253 - -
Dod07g1925 315 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod07g1925 315 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod07g1925 315 Gene3D - 70 117 - -
Dod07g1925 315 Gene3D - 11 68 - -
Dod07g1925 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod07g1925 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Dod07g1925 315 SMART sant 13 64 IPR001005 -
Dod07g1925 315 SMART sant 67 115 IPR001005 -
Dod07g1925 315 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1925 Dod-Chr7 49728693 49731598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1925 1 309 MYB Transcription Factor Family AT3G61250 61.859 1.06e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod07g1925 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1925 K09422 - gmx:100800408 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0774 01 14198700 14202317 Dod07g1925 07 49728693 49731598 PCT